Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 8.3e-171 603.6 299 100.0
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 6.2e-142 507.7 300 83.7
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 4.0e-141 505.0 300 83.7
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 4.6e-137 491.5 306 82.7
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 3.3e-135 485.3 300 82.0
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 3.3e-135 485.3 301 81.1
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.2e-132 476.9 304 80.6
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.5e-132 476.5 304 80.9
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.5e-132 476.5 304 80.9
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.5e-132 476.5 304 80.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 3.4e-132 475.3 304 80.3
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 5.3e-117 424.9 297 72.7
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 7.4e-103 377.9 246 78.9
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 2.1e-102 376.3 295 65.1
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 8.2e-102 374.4 297 64.3
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 8.2e-102 374.4 304 63.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 4.5e-100 368.6 295 65.8
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 8.4e-99 364.4 294 65.3
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.1e-98 364.0 296 63.2
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.4e-98 363.6 303 64.7
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 4.2e-98 362.1 299 64.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 9.3e-98 360.9 292 64.7
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 9.3e-98 360.9 303 64.0
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.1e-97 359.8 299 63.2
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.6e-97 358.6 293 64.2
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 6.0e-97 358.2 299 61.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.3e-96 357.1 299 61.5
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-96 356.7 299 63.5
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.1e-96 355.1 292 62.7
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 6.7e-96 354.8 299 62.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.9e-95 353.2 285 63.5
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.5e-95 352.8 285 63.9
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.5e-95 352.8 284 64.4
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.3e-95 352.1 292 62.0
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.7e-94 349.0 285 63.2
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 4.8e-94 348.6 310 60.3
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.1e-93 347.4 298 62.4
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 4.1e-93 345.5 266 65.0
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.9e-93 344.7 296 61.5
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.2e-92 344.0 290 62.8
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.5e-92 343.6 293 59.0
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.5e-92 343.6 297 58.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.0e-92 343.2 311 57.9
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.5e-92 342.0 336 56.8
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.2e-91 339.7 291 59.5
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 2.2e-91 339.7 292 59.9
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 8.5e-91 337.8 282 63.1
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 8.5e-91 337.8 292 59.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 1.1e-90 337.4 292 59.6
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.9e-90 336.7 293 61.4
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.5e-90 336.3 246 64.6
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 3.2e-90 335.9 329 56.5
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 5.5e-90 335.1 317 56.8
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 9.4e-90 334.3 291 61.9
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.4e-88 330.5 288 56.9
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.3e-88 329.7 346 54.6
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.9e-88 328.9 297 57.6
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 8.8e-88 327.8 293 60.8
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.3e-87 325.9 276 62.3
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.3e-87 325.5 314 56.7
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.3e-86 323.9 256 64.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.8e-86 322.8 267 61.8
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 3.7e-86 322.4 289 57.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-85 320.5 263 61.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.4e-85 320.5 253 62.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.8e-85 320.1 268 63.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 2.4e-85 319.7 315 56.5
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.1e-85 319.3 297 59.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 4.1e-85 318.9 260 61.5
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 4.1e-85 318.9 329 52.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 5.3e-85 318.5 244 64.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.5e-84 317.0 238 64.3
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.0e-84 316.6 269 61.3
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 3.4e-84 315.8 244 63.5
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 4.5e-84 315.5 303 55.8
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-83 313.9 268 59.0
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.9e-83 312.8 260 60.8
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.4e-82 310.5 240 63.8
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 3.2e-82 309.3 303 55.1
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 2.7e-81 306.2 280 57.1
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.7e-81 305.4 241 63.9
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 6.1e-81 305.1 353 52.7
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.9e-81 304.7 292 55.5
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.9e-81 304.7 308 54.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 5.1e-80 302.0 264 62.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 6.7e-80 301.6 244 61.9
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 8.8e-80 301.2 264 62.1
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.1e-79 300.8 237 62.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.0e-79 300.1 274 60.2
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 7.4e-79 298.1 293 55.3
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.3e-78 297.4 243 59.3
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 3.7e-78 295.8 277 58.1
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 3.7e-78 295.8 277 58.1
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 3.7e-78 295.8 277 58.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.8e-77 293.5 287 55.4
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.4e-77 293.1 311 55.0
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 7.7e-76 288.1 243 58.4
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 5.0e-75 285.4 171 83.0
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.2e-74 282.7 231 59.3
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 3.6e-73 279.3 239 61.1
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.3e-72 276.6 285 55.1
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 6.3e-70 268.5 244 57.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.0e-68 263.5 312 47.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.9e-66 256.9 212 65.1
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.3e-62 244.2 224 57.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.8e-62 243.0 459 36.8
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.3e-62 241.9 179 65.9
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.2e-60 237.7 234 55.1
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 2.0e-60 236.9 243 50.2
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.7e-57 226.5 234 49.6
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 5.7e-55 218.8 232 49.6
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 5.7e-55 218.8 195 59.0
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.5e-52 209.5 238 47.5
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.9e-43 179.5 177 55.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.5e-42 177.6 162 53.7
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 8.9e-40 168.3 132 68.2
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 3.7e-38 162.9 118 62.7
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.4e-37 160.2 118 66.1
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 7.8e-36 155.2 152 50.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.5e-34 150.2 216 44.9
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 7.3e-34 148.7 235 38.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.4e-32 144.4 89 71.9
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 5.8e-31 139.0 118 60.2
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 9.8e-31 138.3 147 47.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.4e-29 133.7 88 70.5
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.4e-29 132.5 114 60.5
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.4e-24 117.9 78 70.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.4e-24 117.9 67 82.1
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.3e-24 117.1 71 76.1
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.3e-24 117.1 71 76.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.2e-21 106.7 93 57.0
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.1e-17 94.0 68 66.2
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 1.8e-16 90.9 82 52.4
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.4e-16 90.5 71 66.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 4.0e-16 89.7 59 69.5
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 3.4e-15 86.7 84 57.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 9.9e-15 85.1 42 85.7
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.7e-14 84.3 72 59.7
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.4e-13 80.5 46 78.3
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.4e-13 79.3 44 77.3
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 1.2e-12 78.2 44 84.1
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 1.2e-12 78.2 44 84.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.0e-08 63.2 186 26.9
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 9.0e-08 62.0 81 44.4
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 7.6e-07 58.9 202 25.2


User provided reference genes

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