Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 2.3e-50 201.8 96 100.0
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 4.7e-19 97.8 71 69.0
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 1.1e-18 96.7 57 77.2
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 1.4e-18 96.3 56 78.6
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 1.8e-18 95.9 56 78.6
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 6.8e-18 94.0 51 84.3
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.5e-17 92.8 51 82.4
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.5e-17 92.8 51 82.4
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.5e-17 92.8 51 82.4
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.5e-17 92.8 51 82.4
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 4.4e-17 91.3 51 80.4
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 7.6e-17 90.5 40 97.5
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 7.6e-17 90.5 51 78.4
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 7.6e-17 90.5 51 80.4
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 9.9e-17 90.1 51 78.4
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 2.2e-16 89.0 40 95.0
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 2.2e-16 89.0 40 95.0
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 2.2e-16 89.0 40 95.0
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 2.2e-16 89.0 40 95.0
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 3.7e-16 88.2 51 74.5
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 4.9e-16 87.8 51 72.5
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 6.4e-16 87.4 51 78.4
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 6.4e-16 87.4 51 78.4
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 6.4e-16 87.4 51 78.4
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 5.4e-15 84.3 53 66.0
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 2.7e-14 82.0 45 80.0
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 7.8e-14 80.5 51 72.5
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 1.3e-13 79.7 51 72.5
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 1.7e-13 79.3 37 83.8
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 2.3e-13 79.0 44 79.5
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 3.0e-13 78.6 51 68.6
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 5.1e-13 77.8 40 82.5
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 5.1e-13 77.8 51 68.6
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 5.1e-13 77.8 41 80.5
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 6.6e-13 77.4 40 82.5
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 6.6e-13 77.4 51 66.7
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 6.6e-13 77.4 57 59.6
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 8.6e-13 77.0 56 60.7
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 8.6e-13 77.0 53 64.2
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 8.6e-13 77.0 51 68.6
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 8.6e-13 77.0 43 74.4
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 8.6e-13 77.0 51 66.7
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 1.1e-12 76.6 40 80.0
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 1.5e-12 76.3 51 66.7
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 1.5e-12 76.3 51 68.6
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.9e-12 75.9 51 62.7
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.9e-12 75.9 51 62.7
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 1.9e-12 75.9 62 58.1
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.5e-12 75.5 51 66.7
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.5e-12 75.5 51 66.7
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 2.5e-12 75.5 40 75.0
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 2.5e-12 75.5 56 62.5
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 2.5e-12 75.5 51 62.7
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 2.5e-12 75.5 41 78.0
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 2.5e-12 75.5 51 60.8
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 3.3e-12 75.1 53 62.3
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 3.3e-12 75.1 40 75.0
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 4.3e-12 74.7 51 62.7
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 5.6e-12 74.3 40 77.5
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 7.3e-12 73.9 51 62.7
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 7.3e-12 73.9 40 75.0
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 7.3e-12 73.9 40 75.0
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 7.3e-12 73.9 40 75.0
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 7.3e-12 73.9 40 80.0
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 7.3e-12 73.9 46 65.2
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 7.3e-12 73.9 40 72.5
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 9.6e-12 73.6 40 77.5
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 9.6e-12 73.6 40 77.5
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 9.6e-12 73.6 40 77.5
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 1.2e-11 73.2 40 75.0
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 1.2e-11 73.2 42 71.4
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 1.2e-11 73.2 42 71.4
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.2e-11 73.2 40 72.5
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.2e-11 73.2 52 61.5
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.2e-11 73.2 52 61.5
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.2e-11 73.2 40 75.0
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 1.2e-11 73.2 40 77.5
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 1.2e-11 73.2 40 72.5
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.6e-11 72.8 40 75.0
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 1.6e-11 72.8 40 72.5
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.6e-11 72.8 40 72.5
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.6e-11 72.8 40 72.5
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 1.6e-11 72.8 41 70.7
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 1.6e-11 72.8 40 75.0
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 2.1e-11 72.4 43 74.4
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.1e-11 72.4 40 72.5
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 2.1e-11 72.4 40 72.5
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-11 72.0 40 75.0
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-11 72.0 40 75.0
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 2.8e-11 72.0 41 75.6
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 3.6e-11 71.6 40 72.5
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.7e-11 71.2 39 74.4
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.7e-11 71.2 39 74.4
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 72.5
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 70.0
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 4.7e-11 71.2 51 62.7
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 75.0
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 72.5
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 72.5
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 4.7e-11 71.2 40 75.0
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 6.2e-11 70.9 40 75.0
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 6.2e-11 70.9 40 75.0
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 6.2e-11 70.9 40 70.0
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 6.2e-11 70.9 40 70.0
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 6.2e-11 70.9 40 75.0
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 8.1e-11 70.5 40 75.0
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 8.1e-11 70.5 39 74.4
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.1e-10 70.1 40 72.5
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.1e-10 70.1 40 72.5
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 1.1e-10 70.1 40 75.0
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.1e-10 70.1 40 72.5
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.1e-10 70.1 40 70.0
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.4e-10 69.7 39 71.8
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.4e-10 69.7 39 71.8
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 1.8e-10 69.3 40 72.5
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 1.8e-10 69.3 40 70.0
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 1.8e-10 69.3 41 73.2
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 2.4e-10 68.9 40 70.0
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 2.4e-10 68.9 40 72.5
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 2.4e-10 68.9 49 59.2
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 3.1e-10 68.6 40 70.0
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 4.0e-10 68.2 41 68.3
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 4.0e-10 68.2 39 74.4
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 4.0e-10 68.2 40 67.5
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 5.2e-10 67.8 42 64.3
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 6.8e-10 67.4 40 70.0
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 6.8e-10 67.4 40 70.0
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 6.8e-10 67.4 39 71.8
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 6.8e-10 67.4 39 74.4
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 6.8e-10 67.4 53 54.7
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.9e-10 67.0 39 71.8
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 8.9e-10 67.0 39 71.8
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 1.2e-09 66.6 40 70.0
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 1.2e-09 66.6 41 68.3
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 1.5e-09 66.2 41 68.3
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 2.0e-09 65.9 39 74.4
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.6e-09 65.5 40 70.0
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 4.4e-09 64.7 40 67.5
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 7.6e-09 63.9 40 65.0
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 1.3e-08 63.2 46 63.0
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 3.8e-08 61.6 41 65.9
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 3.8e-08 61.6 41 65.9
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 3.8e-08 61.6 41 65.9
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.4e-07 59.7 37 67.6
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.9e-07 59.3 39 64.1
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 1.9e-07 59.3 41 63.4
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.2e-07 58.5 31 74.2
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 4.2e-07 58.2 41 63.4


User provided reference genes

Program Settings