Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc23G210 Aethionema arabicum HOM05D002619 ORTHO05D002804 5.4e-97 357.8 206 100.0
C02p12190 Brassica napus HOM05D002619 ORTHO05D002804 7.2e-57 224.6 231 66.7
Thhalv10014545m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 7.2e-57 224.6 240 68.8
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 4.7e-56 221.9 242 59.9
CARHR273340 Cardamine hirsuta HOM05D002619 ORTHO05D002804 6.1e-56 221.5 236 67.4
AT5G59760 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 9.7e-54 214.2 234 65.4
AL8G36280 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.1e-52 209.1 229 66.8
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 4.5e-51 205.3 241 58.5
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 7.7e-51 204.5 241 57.3
Carub.0008s2042 Capsella rubella HOM05D002619 ORTHO05D002804 4.7e-48 195.3 221 67.4
BraA10t43782Z Brassica rapa HOM05D002619 ORTHO05D002804 1.4e-47 193.7 241 62.2
BcaB08g36223 Brassica carinata HOM05D002619 ORTHO05D002804 1.5e-46 190.3 238 61.3
BolC2t07321H Brassica oleracea HOM05D002619 ORTHO05D002804 1.5e-46 190.3 231 59.7
A10p16980 Brassica napus HOM05D002619 ORTHO05D002804 1.2e-43 180.6 241 58.9
BcaB05g22574 Brassica carinata HOM05D002619 ORTHO05D002804 1.7e-42 176.8 219 60.3
BraA02t05769Z Brassica rapa HOM05D002619 ORTHO05D002804 1.1e-41 174.1 234 56.4
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 2.5e-41 172.9 213 52.6
A02p06890 Brassica napus HOM05D002619 ORTHO05D002804 5.5e-41 171.8 234 56.0
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 3.6e-16 89.4 193 44.0
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 4.7e-16 89.0 232 40.1
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 6.2e-16 88.6 192 43.8
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 6.2e-16 88.6 198 43.9
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 8.0e-16 88.2 199 43.2
BcaB02g10192 Brassica carinata HOM05D002619 ORTHO05D002804 1.8e-15 87.0 242 40.1
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 5.2e-15 85.5 244 39.8
C04p22400 Brassica napus HOM05D002619 ORTHO05D002804 1.5e-14 84.0 201 43.3
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.5e-14 84.0 256 35.5
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 2.6e-14 83.2 244 41.0
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 3.4e-14 82.8 230 37.0
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 4.4e-14 82.4 195 34.9
BolC4t23756H Brassica oleracea HOM05D002619 ORTHO05D002804 7.5e-14 81.6 199 42.7
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 7.5e-14 81.6 191 34.6
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.3e-13 80.9 210 39.0
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 1.3e-13 80.9 219 34.2
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 2.2e-13 80.1 214 39.7
Sp4g11560 Schrenkiella parvula HOM05D002619 ORTHO05D002804 3.7e-13 79.3 204 38.7
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 3.7e-13 79.3 240 39.2
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 3.7e-13 79.3 273 34.8
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 4.9e-13 79.0 222 38.7
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 6.4e-13 78.6 226 38.9
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 8.3e-13 78.2 186 44.1
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 1.4e-12 77.4 276 35.5
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 1.4e-12 77.4 220 35.5
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 1.9e-12 77.0 193 40.9
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 1.9e-12 77.0 194 42.3
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 4.1e-12 75.9 266 32.0
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 5.4e-12 75.5 185 41.6
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 5.4e-12 75.5 185 41.6
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.4e-12 75.5 250 30.0
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 7.0e-12 75.1 208 37.5
BcaC02g10992 Brassica carinata HOM05D002619 ORTHO05D002804 9.2e-12 74.7 187 43.3
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 9.2e-12 74.7 229 36.2
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.2e-11 74.3 203 38.9
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 1.6e-11 73.9 240 37.9
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 2.0e-11 73.6 183 38.3
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 2.0e-11 73.6 238 37.0
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 3.5e-11 72.8 199 37.2
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 3.5e-11 72.8 242 29.3
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 3.5e-11 72.8 207 39.6
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 4.6e-11 72.4 230 34.3
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 4.6e-11 72.4 239 37.7
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 4.6e-11 72.4 207 36.7
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 7.8e-11 71.6 227 34.4
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.0e-10 71.2 234 32.1
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 1.3e-10 70.9 210 39.0
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 1.3e-10 70.9 236 36.0
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 3.9e-10 69.3 240 36.7
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 3.9e-10 69.3 219 29.2
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 3.9e-10 69.3 224 36.2
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 5.0e-10 68.9 237 29.5
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 5.0e-10 68.9 208 36.1
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.6e-10 68.2 195 32.3
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.6e-10 68.2 220 31.4
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 1.1e-09 67.8 225 35.6
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.1e-09 67.8 228 29.4
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.1e-09 67.8 196 33.2
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 1.1e-09 67.8 212 35.4
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 1.5e-09 67.4 221 34.8
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 1.5e-09 67.4 273 30.8
Sopen11g030810 Solanum pennellii HOM05D002619 ORTHO05D002804 3.3e-09 66.2 163 33.7
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 4.3e-09 65.9 136 37.5
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 7.3e-09 65.1 214 33.2
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.3e-09 65.1 222 30.6
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 9.5e-09 64.7 272 28.7
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.2e-08 64.3 239 32.2
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.2e-08 64.3 214 29.9
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 1.2e-08 64.3 213 32.9
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 1.6e-08 63.9 238 32.4
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.6e-08 63.9 271 31.0
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 2.8e-08 63.2 170 35.3
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 2.8e-08 63.2 235 34.0
Solyc11g073180.2 Solanum lycopersicum HOM05D002619 ORTHO05D002804 2.8e-08 63.2 163 31.9
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 3.6e-08 62.8 215 29.3
SGA_v2.0_scaffold134G34714 Striga asiatica HOM05D002619 ORTHO05D002804 3.6e-08 62.8 168 32.7
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 6.2e-08 62.0 245 31.8
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 8.1e-08 61.6 230 28.7
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.4e-07 60.8 173 34.7
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.4e-07 60.8 71 46.5
arahy.Tifrunner.gnm1.ann1.6E5JYA Arachis hypogaea HOM05D002619 ORTHO05D002804 3.1e-07 59.7 210 32.9
TWI59G0134 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.1e-07 59.7 214 36.0
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 4.0e-07 59.3 189 35.4
PGSC0003DMG400015562 Solanum tuberosum HOM05D002619 ORTHO05D002804 4.0e-07 59.3 169 31.4
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 5.2e-07 58.9 248 33.1
SGA_v2.0_scaffold81G26088 Striga asiatica HOM05D002619 ORTHO05D002804 5.2e-07 58.9 167 32.9
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 6.8e-07 58.5 174 30.5
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 6.8e-07 58.5 104 39.4
Ah.11g044750 Amaranthus hybridus HOM05D002307 ORTHO05D002378 8.9e-07 58.2 170 38.2
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 8.9e-07 58.2 200 35.5
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 8.9e-07 58.2 214 39.7
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.9e-07 58.2 236 32.2
Glyma.15G041400 Glycine max HOM05D002619 ORTHO05D002804 1.2e-06 57.8 210 28.1
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 1.2e-06 57.8 71 45.1
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea HOM05D002619 ORTHO05D002804 1.5e-06 57.4 206 33.0
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 1.5e-06 57.4 237 33.8
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 1.5e-06 57.4 203 30.0
EL10Ac7g15959 Beta vulgaris HOM05D002619 ORTHO05D002804 2.0e-06 57.0 214 28.0
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 2.0e-06 57.0 199 28.1
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 2.6e-06 56.6 96 41.7
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 2.6e-06 56.6 80 42.5
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 3.4e-06 56.2 178 39.3
Peaxi162Scf00356g00031 Petunia axillaris HOM05D002619 ORTHO05D002804 4.4e-06 55.8 232 34.5
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 5.8e-06 55.5 212 29.2
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 5.8e-06 55.5 234 33.3
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 5.8e-06 55.5 125 36.0
Thhalv10017900m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 7.5e-06 55.1 191 33.5
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 7.5e-06 55.1 211 26.5
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 7.5e-06 55.1 235 30.6
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 9.9e-06 54.7 195 33.3


User provided reference genes

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