Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.6e-124 449.5 236 100.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.5e-82 309.3 236 71.6
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.2e-78 296.2 235 70.6
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 3.8e-78 295.4 241 68.0
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 3.8e-78 295.4 241 68.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 5.0e-78 295.0 235 70.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.0e-78 295.0 237 69.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.0e-78 295.0 237 69.2
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 8.5e-78 294.3 234 69.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 8.5e-78 294.3 236 70.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.9e-77 293.1 237 70.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.9e-77 293.1 237 70.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.2e-77 292.4 235 69.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 7.9e-76 287.7 236 66.5
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 6.7e-75 284.6 235 66.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.8e-72 276.6 214 70.6
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-71 272.7 210 69.5
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.0e-62 244.2 223 60.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 8.5e-62 241.1 214 61.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.5e-61 240.4 214 61.2
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.5e-61 239.6 223 59.2
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.2e-61 239.2 227 58.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 9.4e-61 237.7 224 56.2
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.4e-61 237.7 211 61.1
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 2.7e-60 236.1 215 59.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.7e-60 236.1 225 56.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 6.1e-60 235.0 214 59.8
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 6.1e-60 235.0 207 62.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.0e-59 234.2 219 58.9
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.4e-59 233.8 210 60.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.4e-59 233.8 230 56.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.3e-59 233.0 230 55.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.0e-59 232.6 231 55.0
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.1e-58 230.7 209 59.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.1e-58 230.7 204 61.3
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.5e-58 230.3 209 59.8
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.6e-58 229.6 214 58.4
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.3e-58 229.2 197 61.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 7.5e-58 228.0 212 59.9
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.3e-57 227.3 229 55.0
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.3e-57 227.3 218 57.8
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.7e-57 225.7 226 52.2
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.7e-57 225.7 229 53.7
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 4.8e-57 225.3 212 56.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 8.2e-57 224.6 218 57.3
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.2e-57 224.6 223 55.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 8.2e-57 224.6 224 54.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-56 223.8 224 55.8
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.1e-56 222.2 230 55.7
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 9.1e-56 221.1 215 55.3
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.2e-55 220.7 207 58.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.2e-55 220.7 233 51.9
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.6e-55 220.3 230 53.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.6e-55 220.3 185 61.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.6e-55 219.5 217 56.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.5e-55 219.2 206 57.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.5e-55 219.2 224 54.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.5e-55 218.8 217 55.3
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 4.5e-55 218.8 224 53.1
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-54 217.6 204 57.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.7e-54 216.9 233 53.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.7e-54 216.9 231 54.5
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.9e-54 216.1 237 53.6
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 3.8e-54 215.7 214 54.7
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.0e-54 215.3 218 52.8
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 6.5e-54 214.9 206 56.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.5e-54 214.9 206 57.3
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 8.5e-54 214.5 230 54.3
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 8.5e-54 214.5 214 54.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.5e-54 214.5 223 51.6
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.1e-53 214.2 218 55.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-53 213.4 227 52.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.9e-53 213.4 225 52.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.2e-53 212.6 226 51.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.5e-53 211.8 207 53.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 7.2e-53 211.5 218 51.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 7.2e-53 211.5 210 55.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.4e-53 211.1 223 51.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.2e-52 210.7 230 50.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-52 209.5 196 57.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.7e-52 208.8 215 53.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.0e-51 207.6 218 52.8
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-51 207.6 238 51.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.8e-51 206.8 207 53.6
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.8e-51 206.8 212 53.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.2e-51 205.3 212 52.8
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 6.8e-51 204.9 216 50.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 6.8e-51 204.9 203 53.7
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.2e-50 204.1 221 56.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-50 204.1 195 53.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.5e-50 203.8 229 50.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.4e-50 202.6 230 50.4
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.4e-50 202.2 231 52.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 7.5e-50 201.4 229 47.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 9.8e-50 201.1 191 53.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 9.8e-50 201.1 191 53.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.7e-49 200.3 216 49.1
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.7e-49 199.1 216 49.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.7e-49 199.1 208 51.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.8e-49 198.7 209 53.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 4.8e-49 198.7 217 51.6
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.3e-49 198.4 230 50.9
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.3e-49 198.4 206 52.9
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.3e-49 198.0 249 49.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.1e-48 197.6 211 52.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.4e-48 197.2 244 46.3
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.4e-48 197.2 230 49.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-48 196.8 229 48.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-48 196.8 220 51.4
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.1e-48 195.7 192 54.2
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.4e-48 195.3 227 51.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 9.1e-48 194.5 208 51.0
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.5e-47 192.6 192 52.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.5e-47 192.2 203 51.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.2e-46 189.9 205 51.7
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.9e-46 189.5 225 51.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.8e-46 189.1 206 51.5
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.5e-45 186.4 252 45.2
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 5.5e-45 185.3 210 50.0
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.0e-43 181.0 208 48.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.0e-43 181.0 223 45.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 4.0e-43 179.1 222 46.8
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.7e-41 173.7 185 51.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 4.5e-39 165.6 201 46.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.0e-36 154.8 205 42.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.5e-34 148.3 217 40.6
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.2e-33 146.7 179 45.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.8e-32 143.7 201 41.8
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.2e-32 141.4 111 63.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.6e-31 140.6 103 65.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.5e-31 139.4 121 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.3e-30 137.5 208 41.8
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.5e-29 133.3 92 68.5
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.6e-28 129.4 140 55.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-27 127.1 83 71.1
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.9e-25 119.8 209 37.8
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.2e-23 114.4 90 63.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-23 113.6 162 43.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.0e-23 112.1 207 35.7
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.0e-22 109.8 99 54.5
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.9e-22 109.4 132 49.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.6e-22 108.6 136 50.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.6e-22 108.6 202 37.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.9e-21 107.1 182 39.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 3.3e-21 106.3 85 65.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.4e-19 100.9 70 70.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 7.5e-18 95.1 63 77.8
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-16 90.5 83 56.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.5e-13 80.1 204 34.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-11 74.7 189 33.9
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.8e-11 73.9 55 78.2
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.6e-10 70.1 76 47.4
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.1e-08 62.8 42 69.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.2e-08 61.6 46 69.6
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.6e-06 55.5 92 41.3


User provided reference genes

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