Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.0e-95 352.4 178 100.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 9.5e-90 333.6 178 93.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.2e-88 327.8 178 92.1
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.2e-88 327.8 178 92.1
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.4e-85 319.7 178 90.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 9.2e-85 317.0 178 89.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.0e-84 315.8 178 88.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 3.5e-84 315.1 178 88.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-83 313.2 178 88.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.7e-83 312.8 178 88.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.0e-83 311.2 176 88.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 8.6e-83 310.5 178 87.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 8.6e-83 310.5 178 87.6
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.9e-82 309.3 178 86.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-81 305.8 176 86.4
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.1e-81 305.8 176 86.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-81 305.8 176 86.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.1e-81 305.8 178 85.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.6e-81 305.1 176 86.4
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.2e-81 304.3 176 85.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-78 296.2 178 82.6
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 8.9e-72 273.9 176 76.1
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.2e-71 273.5 178 74.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.6e-71 270.8 176 75.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 2.2e-70 269.2 178 74.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.2e-70 269.2 178 75.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.2e-70 269.2 177 74.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.2e-70 269.2 176 72.7
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-70 269.2 178 71.9
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.9e-70 268.9 159 84.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.9e-70 268.9 178 74.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.8e-70 268.5 178 70.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.4e-70 267.7 176 72.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.1e-69 266.9 176 74.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.9e-69 266.2 177 70.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.2e-69 265.4 178 73.6
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.2e-69 265.4 178 73.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.2e-69 265.4 178 71.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.1e-69 265.0 178 71.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.1e-69 265.0 175 74.3
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.1e-69 265.0 175 74.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 4.1e-69 265.0 175 74.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.4e-69 264.6 174 73.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.4e-69 264.6 178 73.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 7.1e-69 264.2 178 72.5
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.1e-69 264.2 178 73.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-68 263.5 178 72.5
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-68 263.1 176 70.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-68 263.1 178 73.0
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-68 262.7 178 72.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.5e-68 261.9 178 71.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.0e-68 261.2 178 70.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.0e-68 261.2 178 70.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.0e-68 261.2 178 73.6
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.8e-68 260.8 178 70.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 7.8e-68 260.8 176 73.9
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.8e-68 260.8 176 73.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.0e-67 260.4 178 71.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.3e-67 260.0 178 71.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.7e-67 259.6 176 71.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.7e-67 259.6 178 70.2
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.3e-67 259.2 178 71.3
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.3e-67 259.2 178 71.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.3e-67 259.2 178 70.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.0e-67 258.8 178 71.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.0e-67 258.8 172 70.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.8
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 69.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 5.1e-67 258.1 178 70.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 6.6e-67 257.7 176 68.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.6e-67 257.3 178 70.8
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 8.6e-67 257.3 176 69.9
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.6e-67 257.3 176 69.9
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.6e-67 257.3 176 73.3
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.1e-66 256.9 178 71.3
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.9e-66 256.1 177 68.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.5e-66 255.8 178 69.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.5e-66 255.8 173 73.4
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.3e-66 255.4 178 68.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 3.3e-66 255.4 177 68.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.6e-66 253.8 176 71.6
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.2e-65 253.4 176 68.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.6e-65 253.1 178 69.1
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-65 253.1 175 69.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.8e-65 252.3 176 69.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.2e-65 251.1 151 79.5
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 6.2e-65 251.1 176 68.2
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.1e-65 250.8 176 69.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.1e-65 250.8 176 69.3
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.1e-64 250.4 173 68.2
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-64 250.4 178 66.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.1e-64 248.8 164 73.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-64 248.8 176 68.8
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.1e-64 248.8 176 67.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 5.2e-64 248.1 178 66.3
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 9.0e-64 247.3 178 69.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.4e-63 245.4 178 66.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.4e-63 245.4 176 68.2
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.8e-63 244.6 175 68.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.8e-63 244.6 175 69.7
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 9.9e-63 243.8 178 68.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-62 243.4 163 73.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.7e-62 243.0 178 68.0
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.2e-62 242.7 175 66.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 3.8e-62 241.9 178 65.7
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.9e-62 241.5 176 67.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.9e-62 241.5 175 68.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.1e-61 240.4 178 66.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.9e-61 239.6 176 67.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.2e-61 238.8 176 65.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.2e-60 236.9 177 63.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.6e-60 236.5 176 64.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.1e-60 236.1 178 62.9
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.5e-60 235.3 174 63.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.0e-60 234.6 176 67.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-59 233.0 168 67.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 5.1e-59 231.5 163 74.2
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.5e-58 229.2 160 66.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.3e-58 228.4 160 65.6
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.3e-57 226.9 172 64.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.6e-57 225.3 179 61.5
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.2e-57 224.6 163 66.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.2e-57 224.6 176 62.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 8.1e-57 224.2 173 61.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-56 223.4 147 72.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.4e-56 223.4 178 61.2
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.2e-55 220.3 172 61.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.0e-55 219.5 158 67.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.0e-55 219.5 173 60.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.6e-55 219.2 172 61.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 9.9e-55 217.2 163 68.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 9.9e-55 217.2 173 61.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 4.9e-54 214.9 169 61.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 9.3e-53 210.7 156 62.8
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.7e-52 209.1 173 59.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-49 199.9 162 63.0
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.8e-49 199.1 160 61.9
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 5.3e-48 194.9 159 64.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-45 186.8 132 65.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-41 172.9 147 61.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.7e-41 172.2 112 72.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.2e-39 167.2 173 46.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 5.1e-35 151.8 106 67.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.2e-33 146.4 173 42.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-31 140.6 150 51.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 4.2e-29 132.1 178 38.8
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.6e-28 129.0 161 42.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.0e-27 127.5 151 40.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-24 115.5 76 71.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.1e-18 97.4 154 36.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-18 97.1 86 57.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.7e-14 83.6 60 68.3
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.7e-14 83.6 60 68.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 3.8e-14 82.4 59 71.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.4e-13 80.5 74 48.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.5e-07 58.9 45 53.3
BcaB06g26460 Brassica carinata HOM05D004405 ORTHO05D095050 2.9e-06 56.2 38 73.7


User provided reference genes

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