Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc2053G10 Aethionema arabicum HOM05D001672 ORTHO05D008153 1.5e-32 142.1 68 100.0
Aa31LG10G12100 Aethionema arabicum HOM05D001672 ORTHO05D008153 1.5e-22 109.0 56 94.6
Aa31LG1G3580 Aethionema arabicum HOM05D001672 ORTHO05D008153 4.2e-22 107.5 56 92.9
Thhalv10006006m.g Eutrema salsugineum HOM05D001672 ORTHO05D008153 1.0e-20 102.8 56 87.5
CARHR167390 Cardamine hirsuta HOM05D001672 ORTHO05D008153 1.4e-20 102.4 56 89.3
AL5G38680 Arabidopsis lyrata HOM05D001672 ORTHO05D008153 1.5e-19 99.0 56 85.7
BcaC07g40066 Brassica carinata HOM05D001672 ORTHO05D008153 1.5e-19 99.0 56 85.7
C08p32500 Brassica napus HOM05D001672 ORTHO05D008153 1.5e-19 99.0 56 85.7
A09p50130 Brassica napus HOM05D001672 ORTHO05D008153 2.6e-19 98.2 56 85.7
BraA09t40464Z Brassica rapa HOM05D001672 ORTHO05D008153 2.6e-19 98.2 56 85.7
Sp5g05380 Schrenkiella parvula HOM05D001672 ORTHO05D008153 2.6e-19 98.2 55 83.6
AT3G57190 Arabidopsis thaliana HOM05D001672 ORTHO05D008153 3.4e-19 97.8 56 85.7
Carub.0005s2401 Capsella rubella HOM05D001672 ORTHO05D008153 4.4e-19 97.4 56 85.7
THA.LOC104824425 Tarenaya hassleriana HOM05D001672 ORTHO05D008153 2.5e-14 81.6 56 69.6
Cpa.g.sc120.14 Carica papaya HOM05D001672 ORTHO05D008153 1.8e-12 75.5 62 59.7
Aa31LG3G8060 Aethionema arabicum HOM05D001672 ORTHO05D008153 1.2e-11 72.8 65 63.1
Thecc.05G144700 Theobroma cacao HOM05D001672 ORTHO05D008153 5.7e-11 70.5 62 59.7
Gohir.D13G011600 Gossypium hirsutum HOM05D001672 ORTHO05D008153 1.3e-10 69.3 61 55.7
Gorai.013G012700 Gossypium raimondii HOM05D001672 ORTHO05D008153 1.3e-10 69.3 61 55.7
Gohir.A13G010900 Gossypium hirsutum HOM05D001672 ORTHO05D008153 1.7e-10 68.9 61 55.7
Atru.chr1.1244 Acer truncatum HOM05D001672 ORTHO05D008153 3.7e-10 67.8 47 68.1
GSVIVG01033556001 Vitis vinifera HOM05D001672 ORTHO05D008153 3.7e-10 67.8 62 53.2
COL.COLO4_21292 Corchorus olitorius HOM05D001672 ORTHO05D008153 8.3e-10 66.6 62 54.8
CSS0031282 Camellia sinensis var. sinensis HOM05D001672 ORTHO05D008153 1.8e-09 65.5 47 66.0
Eucgr.K01580 Eucalyptus grandis HOM05D001672 ORTHO05D008153 2.4e-09 65.1 61 55.7
Eucgr.E02486 Eucalyptus grandis HOM05D001672 ORTHO05D008153 3.1e-09 64.7 62 50.0
CANSAT80G1353 Cannabis sativa HOM05D001672 ORTHO05D008153 4.1e-09 64.3 47 61.7
CANSAT80G2358 Cannabis sativa HOM05D001672 ORTHO05D008153 4.1e-09 64.3 47 61.7
Dinv18689 Davidia involucrata HOM05D001672 ORTHO05D008153 4.1e-09 64.3 47 63.8
FvH4_4g12020 Fragaria vesca HOM05D001672 ORTHO05D008153 4.1e-09 64.3 50 60.0
FAN12G1117 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.1e-09 64.3 50 60.0
FAN12G1718 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.1e-09 64.3 50 60.0
FAN22G1650 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.1e-09 64.3 50 60.0
Lj5g0021823 Lotus japonicus HOM05D001672 ORTHO05D008153 4.1e-09 64.3 47 63.8
Rhsim04G0108200 Rhododendron simsii HOM05D001672 ORTHO05D008153 4.1e-09 64.3 47 66.0
FAN17G0860 Fragaria x ananassa HOM05D001672 ORTHO05D008153 5.4e-09 63.9 47 61.7
PSO339G3968 Papaver somniferum HOM05D001672 ORTHO05D008153 5.4e-09 63.9 62 51.6
PSO384G4779 Papaver somniferum HOM05D001672 ORTHO05D008153 5.4e-09 63.9 62 51.6
RcHm_v2.0_Chr4g0409641 Rosa chinensis HOM05D001672 ORTHO05D008153 5.4e-09 63.9 47 61.7
FAN07G0795 Fragaria x ananassa HOM05D001672 ORTHO05D008153 7.0e-09 63.5 50 60.0
Lj1A1122G39 Lonicera japonica HOM05D001672 ORTHO05D008153 7.0e-09 63.5 56 50.0
RcHm_v2.0_Chr5g0045081 Rosa chinensis HOM05D001672 ORTHO05D008153 9.1e-09 63.2 47 59.6
Actinidia38144 Actinidia chinensis HOM05D001260 ORTHO05D002424 1.2e-08 62.8 47 63.8
Eucgr.F00951 Eucalyptus grandis HOM05D001672 ORTHO05D008153 1.2e-08 62.8 61 55.7
Eucgr.F03826 Eucalyptus grandis HOM05D001672 ORTHO05D008153 2.0e-08 62.0 59 55.9
vmacro09041 Vaccinium macrocarpon HOM05D001672 ORTHO05D008153 2.0e-08 62.0 46 65.2
Lsat_1_v5_gn_5_6501 Lactuca sativa HOM05D001672 ORTHO05D008153 2.7e-08 61.6 56 50.0
Lsat_1_v5_gn_8_83140 Lactuca sativa HOM05D001672 ORTHO05D008153 2.7e-08 61.6 56 50.0
Prupe.7G049700 Prunus persica HOM05D001672 ORTHO05D008153 2.7e-08 61.6 47 61.7
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 3.5e-08 61.2 56 48.2
Aqoxy2G00268 Aquilegia oxysepala HOM05D001672 ORTHO05D008153 3.5e-08 61.2 56 48.2
MBI19_g08305_MAGBIO Magnolia biondii HOM05D001672 ORTHO05D008153 3.5e-08 61.2 47 59.6
Nn2g15055 Nelumbo nucifera HOM05D001672 ORTHO05D008153 3.5e-08 61.2 62 50.0
HanXRQChr06g0176831 Helianthus annuus HOM05D001672 ORTHO05D008153 4.5e-08 60.8 56 48.2
VMungo0720G0829 Vigna mungo HOM05D001672 ORTHO05D008153 5.9e-08 60.5 62 46.8
arahy.Tifrunner.gnm1.ann1.68Y0RY Arachis hypogaea HOM05D001672 ORTHO05D008153 7.7e-08 60.1 47 57.4
Peaxi162Scf01315g00113 Petunia axillaris HOM05D001672 ORTHO05D008153 7.7e-08 60.1 56 48.2
Hund19122 Selenicereus undatus HOM05D001672 ORTHO05D008153 7.7e-08 60.1 61 47.5
SGA_v2.0_scaffold105G30346 Striga asiatica HOM05D001672 ORTHO05D008153 7.7e-08 60.1 54 46.3
Ca_11913_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008153 1.0e-07 59.7 47 57.4
Ca_30977_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008153 1.0e-07 59.7 47 57.4
RcHm_v2.0_Chr2g0168541 Rosa chinensis HOM05D001672 ORTHO05D008153 1.0e-07 59.7 45 60.0
Haze_19753 Corylus avellana HOM05D001260 ORTHO05D002424 1.3e-07 59.3 55 50.9
Medtr1g041890 Medicago truncatula HOM05D001672 ORTHO05D008153 1.3e-07 59.3 47 55.3
PGR142G0049 Punica granatum HOM05D001672 ORTHO05D008153 1.3e-07 59.3 47 61.7
Sabra06G0031100 Salix brachista HOM05D001260 ORTHO05D002424 1.3e-07 59.3 62 46.8
PGSC0003DMG400029846 Solanum tuberosum HOM05D001672 ORTHO05D008153 1.3e-07 59.3 56 48.2
TAR636G0319 Trochodendron aralioides HOM05D001672 ORTHO05D008153 1.3e-07 59.3 62 48.4
arahy.Tifrunner.gnm1.ann1.MWR02K Arachis hypogaea HOM05D001672 ORTHO05D008153 1.7e-07 58.9 47 55.3
EL10Ac3g07168 Beta vulgaris HOM05D001672 ORTHO05D008153 1.7e-07 58.9 61 44.3
Cfa016750 Carpinus fangiana HOM05D001672 ORTHO05D008153 1.7e-07 58.9 61 49.2
CiPaw.09G042600 Carya illinoinensis HOM05D001672 ORTHO05D008153 1.7e-07 58.9 47 57.4
Duzib093G1214 Durio zibethinus HOM05D001672 ORTHO05D008153 1.7e-07 58.9 47 61.7
Potri.006G045200 Populus trichocarpa HOM05D001672 ORTHO05D008153 1.7e-07 58.9 62 45.2
Migut.J01698 Erythranthe guttata HOM05D001672 ORTHO05D008153 2.3e-07 58.5 54 51.9
Hma1.2p1_0222F.1_g093440 Hydrangea macrophylla HOM05D001672 ORTHO05D008153 2.3e-07 58.5 47 57.4
HPP92_001435 Vanilla planifolia HOM05D001672 ORTHO05D008153 2.3e-07 58.5 66 45.5
Nitab4.5_0000562g0010 Nicotiana tabacum HOM05D001672 ORTHO05D008153 2.9e-07 58.2 56 46.4
Solyc10g079840.2 Solanum lycopersicum HOM05D001672 ORTHO05D008153 2.9e-07 58.2 56 46.4
Sopen10g030450 Solanum pennellii HOM05D001672 ORTHO05D008153 2.9e-07 58.2 56 46.4
HPP92_001437 Vanilla planifolia HOM05D001672 ORTHO05D008153 2.9e-07 58.2 55 49.1
CAN.G1656.9 Capsicum annuum HOM05D001672 ORTHO05D008153 3.8e-07 57.8 56 44.6
Nitab4.5_0000677g0050 Nicotiana tabacum HOM05D001672 ORTHO05D008153 3.8e-07 57.8 56 46.4
CDE08G1323 Ceratophyllum demersum HOM05D001672 ORTHO05D008153 5.0e-07 57.4 47 57.4
ECA236G2794 Erigeron canadensis HOM05D001672 ORTHO05D008153 5.0e-07 57.4 56 44.6
Manes.09G016400 Manihot esculenta HOM05D001672 ORTHO05D008153 6.6e-07 57.0 47 55.3
TWI74G0460 Tripterygium wilfordii HOM05D001672 ORTHO05D008153 6.6e-07 57.0 55 54.5
AUR62030395 Chenopodium quinoa HOM05D001672 ORTHO05D008153 8.6e-07 56.6 61 42.6
Ciclev10005039m.g Citrus clementina HOM05D001672 ORTHO05D008153 8.6e-07 56.6 47 61.7
Manes.09G016710 Manihot esculenta HOM05D001672 ORTHO05D008153 8.6e-07 56.6 47 53.2
MSTRG.6399 Avicennia marina HOM05D001672 ORTHO05D008153 1.1e-06 56.2 55 49.1
Glyma.03G008400 Glycine max HOM05D001672 ORTHO05D008153 1.1e-06 56.2 47 51.1
RcHm_v2.0_Chr5g0071051 Rosa chinensis HOM05D001672 ORTHO05D008153 1.5e-06 55.8 45 57.8
Glyma.10G105300 Glycine max HOM05D001672 ORTHO05D008153 2.5e-06 55.1 47 51.1
TPR.G19649 Trifolium pratense HOM05D001672 ORTHO05D008153 2.5e-06 55.1 46 52.2
CDE09G0031 Ceratophyllum demersum HOM05D001672 ORTHO05D008153 3.3e-06 54.7 47 55.3
Cc06_g18400 Coffea canephora HOM05D001672 ORTHO05D008153 3.3e-06 54.7 47 55.3
DCAR_013618 Daucus carota HOM05D001672 ORTHO05D008153 4.2e-06 54.3 46 52.2
Oeu026334.1 Olea europaea HOM05D000056 ORTHO05D000019 5.5e-06 53.9 56 44.6
Psat0s1991g0160 Pisum sativum HOM05D001672 ORTHO05D008153 5.5e-06 53.9 47 48.9
Oeu043105.1 Olea europaea HOM05D001672 ORTHO05D008153 7.2e-06 53.5 56 42.9
ATR0721G134 Amborella trichopoda HOM05D001672 ORTHO05D008153 9.5e-06 53.1 45 57.8


User provided reference genes

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