Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1593.2 836 100.0
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1490.7 837 93.1
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1486.1 837 92.8
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1484.9 837 92.7
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1482.2 837 92.5
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1479.5 837 92.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1476.1 837 92.6
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1459.1 837 91.4
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1447.6 837 90.8
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1443.7 839 90.6
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1436.0 837 88.2
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1435.6 837 90.3
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1433.7 838 90.5
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1431.4 839 90.2
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1431.0 838 90.2
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1428.3 839 90.3
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 839 79.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1307.7 837 80.3
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 840 79.2
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 835 79.8
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1298.5 835 79.4
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1297.0 838 78.6
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 838 79.5
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 839 78.9
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 838 78.9
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1282.7 839 78.3
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1281.9 839 78.3
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1279.6 839 78.3
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 839 77.8
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1274.6 839 78.4
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1274.2 837 77.3
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1271.1 839 77.2
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1271.1 839 77.7
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1270.8 838 77.0
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1269.6 839 77.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1268.8 836 78.3
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1268.4 835 76.8
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 839 77.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 839 77.2
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1266.5 839 76.9
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1265.0 835 77.1
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 835 76.9
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 836 78.1
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1261.1 839 77.0
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 836 77.6
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1259.6 838 76.3
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 835 77.0
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1254.6 828 77.5
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1249.6 835 76.9
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 835 76.5
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1246.5 859 75.1
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 839 76.3
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1243.8 838 76.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1239.9 835 76.6
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1239.2 835 76.0
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1237.6 835 76.5
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1234.6 838 75.3
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 835 76.3
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1231.9 835 75.3
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 836 75.8
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1228.8 838 75.3
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1227.2 846 74.2
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 932 69.7
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1211.4 839 73.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1209.1 841 73.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 839 72.9
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 838 74.5
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 839 72.7
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1204.5 835 74.9
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1201.8 840 73.1
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1196.4 844 73.1
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1192.2 839 72.9
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 836 73.8
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 835 73.4
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1188.3 837 73.7
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1186.0 853 72.5
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1184.9 835 73.2
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1183.3 856 72.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1181.4 853 72.3
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1179.9 856 72.0
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1177.9 834 72.3
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1177.5 840 71.9
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1171.0 839 71.5
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1169.5 805 74.4
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1167.9 841 70.2
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1155.2 839 70.0
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1154.0 838 70.3
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1150.6 840 70.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1134.0 856 69.0
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1124.8 838 69.6
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1123.2 860 70.2
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1114.4 837 70.1
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1113.2 744 75.5
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1109.0 724 78.9
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1102.0 1000 60.9
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 1.7e-306 1055.8 843 64.9
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 3.7e-293 1011.5 835 65.7
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.3e-287 992.3 681 74.4
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 2.6e-286 988.8 721 69.2
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.6e-270 935.6 544 90.3
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.3e-269 933.3 621 80.2
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.5e-254 883.2 853 55.3
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 8.3e-253 877.5 858 56.3
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 5.8e-230 801.6 835 51.5
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 9.9e-230 800.8 521 77.0
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.4e-222 775.8 749 57.0
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 6.6e-218 761.5 545 70.5
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.5e-209 733.0 622 62.7
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.3e-205 720.7 511 74.0
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 2.0e-198 696.8 901 46.4
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.6e-187 660.6 560 63.4
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.4e-183 646.7 425 78.8
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 3.9e-178 629.4 444 75.5
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.2e-163 581.3 440 69.5
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.7e-153 545.8 342 80.1
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 5.9e-150 535.8 400 68.5
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.1e-140 505.0 395 66.8
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.5e-140 504.6 293 91.1
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 4.0e-122 443.4 386 63.0
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 3.3e-116 423.7 339 64.3
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 4.0e-114 416.8 235 90.2
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 8.9e-114 415.6 235 89.8
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.2e-107 395.2 427 54.3
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 3.1e-98 364.0 851 31.3
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 4.4e-97 360.1 261 71.6
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-77 295.8 211 70.6
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 5.1e-77 293.5 858 27.9
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.5e-65 253.8 230 62.6
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 5.0e-64 250.4 269 55.4
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-60 238.8 200 63.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.8e-59 234.6 289 48.1
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.9e-56 224.6 179 67.0
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.3e-53 214.9 122 87.7
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.7e-48 198.7 130 71.5
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 7.2e-47 193.4 135 78.5
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 6.3e-43 180.3 104 86.5
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 4.1e-42 177.6 104 85.6
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 5.9e-41 173.7 96 87.5
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 7.7e-41 173.3 96 89.6
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 2.2e-40 171.8 124 74.2
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 1.8e-37 162.2 105 81.9
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.1e-34 152.9 96 76.0
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.4e-34 152.5 94 79.8
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-31 142.5 94 72.3
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 4.0e-29 134.4 231 39.8
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 5.2e-29 134.0 130 53.1
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.0e-28 132.1 94 70.2
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 1.1e-23 116.3 87 73.6
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 4.0e-21 107.8 220 35.9
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 4.0e-21 107.8 142 44.4
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 6.8e-21 107.1 213 37.6
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.5e-20 105.9 228 34.6
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 2.6e-20 105.1 82 67.1
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.4e-19 100.5 99 46.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.4e-18 99.4 92 57.6
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.9e-16 91.3 72 66.7
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 3.6e-14 84.7 78 64.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 4.1e-10 71.2 58 62.1
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 2.0e-09 68.9 235 28.5
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 5.0e-08 64.3 65 50.8
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 4.7e-06 57.8 52 55.8


User provided reference genes

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