Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 7.5e-59 230.3 118 100.0
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.9e-30 136.0 211 43.6
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 1.4e-20 103.2 210 37.6
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 9.0e-20 100.5 210 36.7
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 2.0e-19 99.4 210 36.2
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 1.4e-17 93.2 220 33.2
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.6e-16 89.7 224 33.9
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 2.7e-16 89.0 216 33.8
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 2.7e-16 89.0 216 33.8
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 2.7e-16 89.0 216 33.8
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 3.5e-16 88.6 226 32.3
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 3.5e-16 88.6 210 34.3
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 4.6e-16 88.2 225 34.7
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 5.1e-15 84.7 214 31.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 5.1e-15 84.7 213 31.9
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 5.1e-15 84.7 214 31.8
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 8.7e-15 84.0 226 32.3
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 3.3e-14 82.0 219 32.4
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 4.3e-14 81.6 210 31.9
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 7.4e-14 80.9 241 31.1
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 1.6e-13 79.7 181 32.6
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.8e-13 79.0 48 79.2
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 3.7e-13 78.6 214 31.8
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 3.7e-13 78.6 214 31.8
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 6.2e-13 77.8 210 32.4
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 8.1e-13 77.4 210 31.9
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.1e-12 77.0 210 31.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.1e-12 77.0 210 31.4
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.4e-12 76.6 48 77.1
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 2.4e-12 75.9 48 79.2
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 4.0e-12 75.1 48 77.1
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 4.0e-12 75.1 210 31.4
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.3e-12 74.7 48 75.0
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 5.3e-12 74.7 210 31.0
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.3e-12 74.7 48 75.0
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 5.3e-12 74.7 210 30.5
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 6.9e-12 74.3 48 75.0
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 9.0e-12 73.9 48 75.0
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 9.0e-12 73.9 210 31.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.2e-11 73.6 210 30.5
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 1.2e-11 73.6 46 76.1
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.2e-11 73.6 210 31.0
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.2e-11 73.6 48 75.0
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.2e-11 73.6 48 75.0
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.2e-11 73.6 48 75.0
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 1.5e-11 73.2 48 72.9
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.5e-11 73.2 48 72.9
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.0e-11 72.8 48 75.0
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.6e-11 72.4 48 75.0
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.6e-11 72.4 204 30.9
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.6e-11 72.4 48 72.9
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.6e-11 72.4 48 72.9
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 2.6e-11 72.4 48 75.0
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.4e-11 72.0 48 72.9
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 3.4e-11 72.0 48 70.8
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 3.4e-11 72.0 48 75.0
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.4e-11 72.0 48 72.9
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.4e-11 72.0 48 68.8
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 4.5e-11 71.6 210 29.0
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 4.5e-11 71.6 216 29.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 4.5e-11 71.6 48 72.9
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 5.8e-11 71.2 212 31.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 5.8e-11 71.2 212 31.6
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 5.8e-11 71.2 212 30.7
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 66.7
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 72.9
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 72.9
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 72.9
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 72.9
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 5.8e-11 71.2 48 70.8
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 7.6e-11 70.9 210 29.5
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 7.6e-11 70.9 48 70.8
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.6e-11 70.9 48 70.8
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.6e-11 70.9 48 66.7
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 7.6e-11 70.9 48 72.9
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 9.9e-11 70.5 48 70.8
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.3e-10 70.1 48 70.8
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.3e-10 70.1 48 72.9
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.3e-10 70.1 48 68.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.3e-10 70.1 48 68.8
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.7e-10 69.7 48 64.6
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.7e-10 69.7 48 72.9
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-10 69.7 211 29.4
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.7e-10 69.7 48 70.8
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.7e-10 69.7 48 68.8
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 2.2e-10 69.3 48 68.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.2e-10 69.3 48 64.6
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.2e-10 69.3 48 68.8
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 2.9e-10 68.9 48 68.8
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 2.9e-10 68.9 103 38.8
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.9e-10 68.9 48 62.5
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 2.9e-10 68.9 48 62.5
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 68.8
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 66.7
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 68.8
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 64.6
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 68.8
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 3.8e-10 68.6 48 68.8
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 4.9e-10 68.2 48 66.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 4.9e-10 68.2 48 68.8
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.4e-10 67.8 48 66.7
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.1e-09 67.0 48 66.7
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 1.4e-09 66.6 74 48.6
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 2.4e-09 65.9 48 70.8
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.4e-09 65.9 48 64.6
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.2e-08 63.5 48 62.5
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 4.6e-08 61.6 210 26.7
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.3e-07 60.1 107 40.2
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 3.9e-07 58.5 51 60.8
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 5.1e-07 58.2 46 54.3
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 6.7e-07 57.8 48 56.2
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.3e-06 55.5 32 84.4


User provided reference genes

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