Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.5e-89 331.6 174 100.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.3e-56 222.6 148 83.8
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.0e-48 195.7 149 72.5
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 2.0e-47 193.0 149 70.5
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 2.0e-47 193.0 149 70.5
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.0e-47 193.0 149 70.5
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.0e-47 193.0 149 70.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.6e-47 192.6 150 72.0
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.7e-47 191.4 149 69.8
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.2e-46 189.5 148 69.6
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.1e-45 187.2 148 69.6
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 7.0e-45 184.5 148 68.2
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 5.9e-44 181.4 149 68.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-43 180.3 149 69.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.3e-43 180.3 149 69.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.3e-43 180.3 149 69.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 8.5e-43 177.6 149 69.1
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-41 172.9 148 67.6
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.4e-40 170.2 148 65.5
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.0e-39 166.4 149 65.8
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 4.5e-36 155.2 146 60.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.7e-28 129.4 134 56.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.7e-27 126.7 149 49.0
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.7e-27 126.7 152 50.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 2.3e-27 126.3 133 56.4
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.3e-27 126.3 130 56.9
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.9e-27 125.9 131 55.0
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.9e-27 125.9 140 52.9
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 6.5e-27 124.8 130 56.9
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 8.6e-27 124.4 152 48.7
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.9e-26 123.2 134 53.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.9e-26 123.2 150 48.7
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.3e-26 122.5 136 51.5
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 3.3e-26 122.5 136 51.5
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 7.2e-26 121.3 134 51.5
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 9.5e-26 120.9 151 49.0
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 9.5e-26 120.9 134 52.2
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.6e-25 120.2 140 50.0
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.6e-25 120.2 140 49.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.1e-25 119.8 134 53.7
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 3.6e-25 119.0 134 52.2
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 3.6e-25 119.0 130 55.4
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 4.7e-25 118.6 151 48.3
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.0e-24 117.5 136 51.5
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.4e-24 117.1 126 53.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.4e-24 117.1 130 53.1
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.8e-24 116.7 131 51.1
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.8e-24 116.7 133 52.6
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.3e-24 116.3 146 45.2
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 3.0e-24 115.9 136 52.2
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 5.2e-24 115.2 134 51.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 8.9e-24 114.4 132 47.7
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 8.9e-24 114.4 146 45.9
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 8.9e-24 114.4 126 53.2
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.2e-23 114.0 148 49.3
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.5e-23 113.6 143 48.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.6e-23 112.8 146 47.3
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.6e-23 112.8 126 51.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 4.4e-23 112.1 144 50.0
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 4.4e-23 112.1 144 47.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 9.8e-23 110.9 140 45.7
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.7e-22 110.2 140 45.7
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.8e-22 109.4 130 50.8
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.7e-22 109.0 138 44.9
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 3.7e-22 109.0 138 44.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.9e-22 108.6 126 51.6
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.3e-22 108.2 138 44.2
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 6.3e-22 108.2 144 47.2
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.8e-21 106.7 115 53.0
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.8e-21 106.7 156 46.8
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 4.1e-21 105.5 154 46.1
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.1e-21 105.5 134 44.8
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 7.0e-21 104.8 122 51.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 7.0e-21 104.8 134 42.5
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 7.0e-21 104.8 151 43.0
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.0e-20 103.2 134 50.7
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.7e-20 102.8 139 46.0
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.5e-20 102.4 154 44.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 4.5e-20 102.1 134 47.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 5.9e-20 101.7 105 54.3
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.9e-20 101.7 143 46.2
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 7.8e-20 101.3 146 43.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.8e-20 101.3 151 45.0
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 6.6e-19 98.2 139 45.3
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.5e-18 97.1 134 47.0
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.5e-18 97.1 130 46.9
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.9e-18 96.7 159 39.6
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.3e-18 95.5 134 46.3
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 5.6e-18 95.1 136 41.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.6e-17 93.6 144 40.3
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-17 92.0 134 46.3
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-17 92.0 134 46.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.7e-17 92.0 99 52.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.4e-16 90.5 168 33.3
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-16 90.1 135 45.9
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-16 90.1 135 45.9
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.8e-16 90.1 140 40.7
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.7e-14 83.6 150 38.0
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.2e-14 83.2 144 38.2
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-14 82.4 149 36.9
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 4.9e-14 82.0 150 36.7
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.9e-14 82.0 150 36.7
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.9e-14 82.0 145 37.2
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.4e-14 81.6 150 36.7
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.1e-13 80.9 100 50.0
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 2.4e-13 79.7 134 41.8
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.4e-13 78.6 150 36.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 7.0e-13 78.2 111 44.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-12 77.4 150 35.3
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.6e-12 77.0 67 64.2
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.6e-12 77.0 111 44.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-12 76.6 111 43.2
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.0e-12 76.6 109 45.0
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-12 75.9 150 34.7
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.8e-12 74.7 111 43.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 5.0e-11 72.0 104 42.3
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.3e-10 69.3 131 37.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.3e-10 69.3 111 41.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.3e-10 69.3 139 36.7
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 2.1e-09 66.6 134 35.8
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.8e-08 63.5 85 50.6
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 4.0e-08 62.4 144 37.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.2e-08 62.0 122 39.3
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 8.9e-08 61.2 104 40.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.4e-07 59.3 75 44.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 5.8e-07 58.5 74 47.3
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 5.8e-07 58.5 51 58.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 3.7e-06 55.8 102 37.3
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 4.9e-06 55.5 59 54.2
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 6.4e-06 55.1 59 54.2
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 8.3e-06 54.7 58 55.2


User provided reference genes

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