Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.7e-78 294.7 170 100.0
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.0e-69 266.9 174 91.4
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.3e-69 265.8 174 90.8
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.1e-39 167.2 183 66.1
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.5e-39 166.0 180 67.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 5.6e-39 164.9 184 62.5
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 8.1e-38 161.0 190 60.0
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.1e-37 159.1 183 65.6
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.1e-34 150.6 189 60.8
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 7.1e-34 147.9 178 60.7
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 8.6e-32 141.0 174 59.8
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 8.6e-32 141.0 174 59.8
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-31 139.8 174 59.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 4.3e-31 138.7 179 58.1
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 4.3e-31 138.7 179 58.1
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 7.3e-31 137.9 173 58.4
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 3.2e-26 122.5 183 55.7
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.5e-23 112.8 182 44.5
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 4.3e-23 112.1 175 55.4
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 4.3e-23 112.1 175 55.4
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-11 73.9 170 39.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-11 73.9 170 41.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 4.9e-11 72.0 170 41.8
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 4.9e-11 72.0 170 38.8
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.9e-11 72.0 174 39.7
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.1e-10 70.9 170 39.4
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.1e-10 70.9 170 37.1
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.4e-10 70.5 170 41.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.4e-10 70.5 171 39.8
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-10 70.5 170 37.1
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-10 70.5 171 39.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 1.4e-10 70.5 175 39.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.2e-10 69.3 177 40.1
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 5.4e-10 68.6 173 39.3
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 9.3e-10 67.8 170 38.8
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.6e-09 67.0 170 39.4
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 2.7e-09 66.2 170 34.1
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 2.7e-09 66.2 38 78.9
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 7.9e-09 64.7 40 75.0
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 7.9e-09 64.7 38 76.3
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.0e-08 64.3 40 72.5
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.0e-08 64.3 40 72.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.3e-08 63.9 175 35.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.8e-08 63.5 40 75.0
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.8e-08 63.5 36 77.8
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.8e-08 63.5 124 37.1
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 3.9e-08 62.4 42 66.7
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 5.1e-08 62.0 41 63.4
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 6.7e-08 61.6 107 41.1
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.7e-08 61.6 81 46.9
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 8.7e-08 61.2 36 69.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 8.7e-08 61.2 131 36.6
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 8.7e-08 61.2 36 75.0
Aa31sc425G10 Aethionema arabicum HOM05D000223 ORTHO05D059241 1.1e-07 60.8 57 70.2
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 1.1e-07 60.8 39 71.8
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.5e-07 60.5 41 65.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.5e-07 60.5 36 72.2
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.5e-07 60.5 39 64.1
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.5e-07 60.5 107 42.1
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.9e-07 60.1 36 72.2
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.9e-07 60.1 36 75.0
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.9e-07 60.1 36 75.0
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.9e-07 60.1 73 47.9
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 1.9e-07 60.1 40 70.0
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 1.9e-07 60.1 36 72.2
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-07 59.7 131 38.9
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-07 59.7 131 38.9
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.5e-07 59.7 36 69.4
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.5e-07 59.7 36 66.7
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 2.5e-07 59.7 36 69.4
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.5e-07 59.7 36 69.4
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 2.5e-07 59.7 36 69.4
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.3e-07 59.3 36 69.4
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 3.3e-07 59.3 36 69.4
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 4.3e-07 58.9 36 72.2
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 5.6e-07 58.5 36 69.4
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 5.6e-07 58.5 36 66.7
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 5.6e-07 58.5 72 47.2
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 5.6e-07 58.5 43 62.8
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 5.6e-07 58.5 46 60.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.4e-07 58.2 107 37.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 9.6e-07 57.8 128 38.3
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 9.6e-07 57.8 107 39.3
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 9.6e-07 57.8 41 63.4
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.3e-06 57.4 92 42.4
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.3e-06 57.4 130 36.9
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.6e-06 57.0 41 65.9
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.6e-06 57.0 61 50.8
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 2.1e-06 56.6 41 63.4
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 2.1e-06 56.6 107 36.4
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.1e-06 56.6 107 36.4
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.1e-06 56.6 107 36.4
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.1e-06 56.6 125 36.0
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 2.1e-06 56.6 41 63.4
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 2.1e-06 56.6 41 63.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.1e-06 56.6 41 63.4
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.8e-06 56.2 94 40.4
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 2.8e-06 56.2 93 45.2
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.8e-06 56.2 39 64.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.8e-06 56.2 36 61.1
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.8e-06 56.2 142 35.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.8e-06 56.2 36 66.7
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.7e-06 55.8 107 36.4
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 3.7e-06 55.8 36 66.7
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 4.8e-06 55.5 141 31.9
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 4.8e-06 55.5 36 66.7
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 6.2e-06 55.1 36 66.7
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 6.2e-06 55.1 87 36.8
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 6.2e-06 55.1 107 37.4
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 8.1e-06 54.7 87 41.4
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 8.1e-06 54.7 144 33.3


User provided reference genes

Program Settings