Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc15G30 Aethionema arabicum HOM05D008317 ORTHO05D010808 2.8e-117 425.2 210 100.0
Aa31sc15G70 Aethionema arabicum HOM05D008317 ORTHO05D010808 4.7e-96 354.8 210 84.8
Aa31LG9G5630 Aethionema arabicum HOM05D008317 ORTHO05D010808 2.2e-93 345.9 210 82.4
Aa31sc15G80 Aethionema arabicum HOM05D008317 ORTHO05D010808 1.3e-90 336.7 209 82.3
AL4G14960 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.4e-28 130.6 212 40.1
Thhalv10003018m.g Eutrema salsugineum HOM05D008317 ORTHO05D010808 7.1e-28 128.3 208 38.5
AT5G43200 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 2.7e-27 126.3 218 39.0
AL8G17380 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.3e-26 124.0 217 35.9
AT2G24480 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 1.1e-25 120.9 211 37.9
AT3G28620 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 8.2e-24 114.8 216 36.1
AL4G18590 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 5.3e-23 112.1 195 37.9
AL4G15690 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 4.5e-22 109.0 213 35.7
Carub.0004s0382 Capsella rubella HOM05D008317 ORTHO05D010808 6.5e-21 105.1 214 36.0
AL4G14890 Arabidopsis lyrata HOM05D001404 ORTHO05D010808 3.6e-19 99.4 145 41.4
BraA04t17491Z Brassica rapa HOM05D008317 ORTHO05D010808 1.0e-18 97.8 208 32.7
Aa31LG5G16710 Aethionema arabicum HOM05D008374 ORTHO05D010264 5.1e-18 95.5 188 35.1
AL4G17000 Arabidopsis lyrata HOM05D008317 ORTHO05D012776 5.1e-18 95.5 213 33.8
BcaB06g27971 Brassica carinata HOM05D008317 ORTHO05D010808 6.7e-18 95.1 214 33.6
BcaC07g40929 Brassica carinata HOM05D008317 ORTHO05D010808 8.8e-18 94.7 213 35.2
BcaC02g08453 Brassica carinata HOM05D008317 ORTHO05D010808 1.3e-16 90.9 211 33.6
C04p54070 Brassica napus HOM05D008317 ORTHO05D010808 1.7e-16 90.5 211 33.6
THA.LOC104811309 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 3.7e-16 89.4 206 32.0
Sp4g03480 Schrenkiella parvula HOM05D008317 ORTHO05D010808 4.8e-16 89.0 211 30.8
THA.LOC104811310 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 1.1e-15 87.8 206 32.0
A04p18900 Brassica napus HOM05D008317 ORTHO05D010808 1.4e-15 87.4 211 33.6
BraA04t17492Z Brassica rapa HOM05D008317 ORTHO05D010808 1.4e-15 87.4 211 33.2
THA.LOC104811308 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 1.8e-15 87.0 206 32.0
CARHR215830 Cardamine hirsuta HOM05D008374 ORTHO05D010264 5.3e-15 85.5 215 30.7
Aa31LG9G6500 Aethionema arabicum HOM05D008374 ORTHO05D010264 6.9e-15 85.1 221 30.3
A09p55570 Brassica napus HOM05D008317 ORTHO05D012776 1.5e-14 84.0 156 34.0
BraA09t40959Z Brassica rapa HOM05D008317 ORTHO05D012776 1.5e-14 84.0 156 34.0
AT3G42940 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 2.0e-14 83.6 193 33.2
Carub.0004s0421 Capsella rubella HOM05D008317 ORTHO05D010808 4.5e-14 82.4 211 28.9
BcaC08g43065 Brassica carinata HOM05D015942 ORTHO05D015884 2.2e-13 80.1 207 31.4
C06p03240 Brassica napus HOM05D015942 ORTHO05D015884 2.2e-13 80.1 207 31.4
AL7G45690 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 3.8e-13 79.3 220 29.5
Aa31LG9G7110 Aethionema arabicum HOM05D008374 ORTHO05D010264 6.5e-13 78.6 155 33.5
Aa31LG9G6480 Aethionema arabicum HOM05D008374 ORTHO05D010264 8.5e-13 78.2 149 34.9
BolC6t35455H Brassica oleracea HOM05D015942 ORTHO05D015884 1.1e-12 77.8 207 30.9
BcaB08g35193 Brassica carinata HOM05D008317 ORTHO05D012776 7.2e-12 75.1 151 30.5
BraA09t41022Z Brassica rapa HOM05D015942 ORTHO05D015884 1.6e-11 73.9 204 31.9
A09p56270 Brassica napus HOM05D015942 ORTHO05D015884 2.1e-11 73.6 204 31.9
AL4G14950 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 4.7e-11 72.4 131 37.4
BcaC07g40858 Brassica carinata HOM05D008317 ORTHO05D012776 4.7e-11 72.4 156 30.1
A04p10810 Brassica napus HOM05D008374 ORTHO05D010264 6.1e-11 72.0 172 31.4
BraA04t16748Z Brassica rapa HOM05D008374 ORTHO05D010264 6.1e-11 72.0 172 31.4
BcaC02g09597 Brassica carinata HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
BcaC02g09599 Brassica carinata HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
C04p44530 Brassica napus HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
C04p44560 Brassica napus HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
BolC4t26025H Brassica oleracea HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
BolC4t26028H Brassica oleracea HOM05D008374 ORTHO05D010264 7.9e-11 71.6 172 30.8
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 1.8e-10 70.5 204 27.5
AT4G12150 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 8.8e-10 68.2 212 25.9
AT5G37270 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 8.8e-10 68.2 204 28.4
C08p38560 Brassica napus HOM05D008317 ORTHO05D012776 8.8e-10 68.2 156 28.8
BolC8t51428H Brassica oleracea HOM05D008317 ORTHO05D012776 8.8e-10 68.2 156 28.8
HanXRQChr05g0146871 Helianthus annuus HOM05D000341 ORTHO05D000557 8.8e-10 68.2 94 36.2
Thhalv10029147m.g Eutrema salsugineum HOM05D008302 ORTHO05D016783 2.6e-09 66.6 58 53.4
AL7G45680 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 3.3e-09 66.2 204 28.4
THA.LOC104808913 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 3.3e-09 66.2 217 27.2
Thhalv10029381m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 7.4e-09 65.1 58 51.7
BcaB06g27982 Brassica carinata HOM05D008317 ORTHO05D010808 1.3e-08 64.3 215 31.2
BcaC07g40927 Brassica carinata HOM05D015942 ORTHO05D015884 1.3e-08 64.3 160 32.5
C08p39220 Brassica napus HOM05D015942 ORTHO05D015884 1.3e-08 64.3 160 32.5
BolC8t51495H Brassica oleracea HOM05D015942 ORTHO05D015884 1.3e-08 64.3 160 32.5
Carub.0007s3282 Capsella rubella HOM05D008374 ORTHO05D010264 1.3e-08 64.3 140 30.7
HanXRQChr05g0146861 Helianthus annuus HOM05D000341 ORTHO05D000557 1.3e-08 64.3 82 37.8
C04p54130 Brassica napus HOM05D008317 ORTHO05D010808 1.7e-08 63.9 186 29.0
BolC4t26965H Brassica oleracea HOM05D008317 ORTHO05D010808 1.7e-08 63.9 186 29.0
Sp6g06800 Schrenkiella parvula HOM05D008374 ORTHO05D010264 1.7e-08 63.9 212 28.3
Sp6g10420 Schrenkiella parvula HOM05D008374 ORTHO05D010264 1.7e-08 63.9 212 28.8
CARHR255750 Cardamine hirsuta HOM05D008302 ORTHO05D000038 2.2e-08 63.5 65 47.7
HanXRQChr05g0146851 Helianthus annuus HOM05D000341 ORTHO05D000557 2.8e-08 63.2 82 36.6
CARHR254030 Cardamine hirsuta HOM05D008302 ORTHO05D000038 3.7e-08 62.8 62 50.0
Aa31LG9G6790 Aethionema arabicum HOM05D008374 ORTHO05D010264 4.8e-08 62.4 141 31.2
AL6G47080 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 4.8e-08 62.4 205 28.8
AT4G12140 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 4.8e-08 62.4 184 27.2
Mapoly0054s0062 Marchantia polymorpha HOM05D000341 ORTHO05D000557 6.3e-08 62.0 52 46.2
BcaC02g09598 Brassica carinata HOM05D008374 ORTHO05D010264 8.2e-08 61.6 140 35.0
BcaC02g09600 Brassica carinata HOM05D008374 ORTHO05D010264 8.2e-08 61.6 140 35.0
BolC4t26030H Brassica oleracea HOM05D008374 ORTHO05D010264 8.2e-08 61.6 140 35.0
A04p10820 Brassica napus HOM05D008374 ORTHO05D010264 1.1e-07 61.2 154 33.1
BraA04t16749Z Brassica rapa HOM05D008374 ORTHO05D010264 1.1e-07 61.2 154 33.1
Aa31sc389G40 Aethionema arabicum HOM05D008374 ORTHO05D010264 1.4e-07 60.8 56 50.0
BcaC06g36080 Brassica carinata HOM05D008374 ORTHO05D010264 1.4e-07 60.8 207 28.0
C07p08070 Brassica napus HOM05D008374 ORTHO05D010264 1.4e-07 60.8 207 28.0
BolC7t41225H Brassica oleracea HOM05D008374 ORTHO05D010264 1.4e-07 60.8 207 28.0
CARHR254040 Cardamine hirsuta HOM05D008302 ORTHO05D000038 1.4e-07 60.8 65 44.6
MELO3C013477.2 Cucumis melo HOM05D052995 ORTHO05D000557 1.4e-07 60.8 51 47.1
CARHR117600 Cardamine hirsuta HOM05D008317 ORTHO05D010808 1.8e-07 60.5 65 50.8
Thhalv10029424m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 1.8e-07 60.5 58 48.3
Thhalv10028290m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 2.4e-07 60.1 202 29.7
Phvul.005G028032 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.4e-07 60.1 63 44.4
Phvul.L001902 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.4e-07 60.1 63 44.4
Phvul.L002302 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 4.1e-07 59.3 63 42.9
PGR044G0297 Punica granatum HOM05D000082 ORTHO05D030517 4.1e-07 59.3 93 35.5
BcaB03g16317 Brassica carinata HOM05D008374 ORTHO05D010264 5.3e-07 58.9 108 34.3
BcaB06g27118 Brassica carinata HOM05D008374 ORTHO05D010264 5.3e-07 58.9 146 32.9
BcaC02g08445 Brassica carinata HOM05D008317 ORTHO05D010808 5.3e-07 58.9 208 26.9
BcaB01g01505 Brassica carinata HOM05D008302 ORTHO05D000038 7.0e-07 58.5 226 28.3
CARHR256630 Cardamine hirsuta HOM05D008302 ORTHO05D000038 7.0e-07 58.5 201 27.9
Haze_02599 Corylus avellana HOM05D000157 ORTHO05D003012 7.0e-07 58.5 102 33.3
Thhalv10028317m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 7.0e-07 58.5 151 30.5
Phvul.L002202 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 7.0e-07 58.5 63 42.9
Sp3g29000 Schrenkiella parvula HOM05D008374 ORTHO05D010264 7.0e-07 58.5 153 30.1
Aa31LG3G8360 Aethionema arabicum HOM05D012539 ORTHO05D000038 9.1e-07 58.2 75 42.7
AT2G24460 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 9.1e-07 58.2 148 31.8
BolC4t26027H Brassica oleracea HOM05D008374 ORTHO05D010264 9.1e-07 58.2 159 30.8
Cpa.g.sc20.15 Carica papaya HOM05D000082 ORTHO05D018908 9.1e-07 58.2 53 49.1
Sed0021279 Sechium edule HOM05D000341 ORTHO05D000557 9.1e-07 58.2 63 41.3
THA.LOC104809115 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 9.1e-07 58.2 228 26.3
BcaB06g27976 Brassica carinata HOM05D008317 ORTHO05D010808 1.2e-06 57.8 127 32.3
BcaC02g08446 Brassica carinata HOM05D008317 ORTHO05D010808 1.2e-06 57.8 127 32.3
THA.LOC104809112 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 1.2e-06 57.8 228 26.3
THA.LOC104809113 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 1.2e-06 57.8 228 26.3
AL2G34260 Arabidopsis lyrata HOM05D001172 ORTHO05D001128 2.0e-06 57.0 63 46.0
AL6G47060 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 2.0e-06 57.0 213 25.8
BcaC02g09601 Brassica carinata HOM05D008374 ORTHO05D010264 2.0e-06 57.0 52 48.1
Thhalv10029142m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 2.0e-06 57.0 57 47.4
Mapoly0044s0014 Marchantia polymorpha HOM05D000341 ORTHO05D000557 2.0e-06 57.0 56 41.1
Aa31LG2G13550 Aethionema arabicum HOM05D012539 ORTHO05D000038 2.6e-06 56.6 176 29.5
AT5G37200 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.6e-06 56.6 216 28.2
Mapoly0045s0150 Marchantia polymorpha HOM05D000157 ORTHO05D000557 2.6e-06 56.6 58 37.9
Phvul.005G027766 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-06 56.6 63 41.3
Phvul.L001602 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-06 56.6 63 41.3
Phvul.L001802 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-06 56.6 63 41.3
Phvul.L002002 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-06 56.6 63 42.9
EL10Ac9g21565 Beta vulgaris HOM05D010671 ORTHO05D013417 3.5e-06 56.2 52 50.0
Cpa.g.sc26.126 Carica papaya HOM05D000082 ORTHO05D000038 3.5e-06 56.2 50 48.0
Phvul.L002102 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 3.5e-06 56.2 81 38.3
AT4G05350 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 4.5e-06 55.8 58 48.3
Sopen00g010260 Solanum pennellii HOM05D000341 ORTHO05D000557 4.5e-06 55.8 51 47.1
THA.LOC104812538 Tarenaya hassleriana HOM05D010088 ORTHO05D012586 4.5e-06 55.8 66 42.4
AT4G12190 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 5.9e-06 55.5 58 48.3
A07p05080 Brassica napus HOM05D008374 ORTHO05D010264 5.9e-06 55.5 151 29.8
BraA07t28300Z Brassica rapa HOM05D008374 ORTHO05D010264 5.9e-06 55.5 151 29.8
Aa31LG1G19820 Aethionema arabicum HOM05D012539 ORTHO05D000038 7.7e-06 55.1 55 45.5
CARHR067670 Cardamine hirsuta HOM05D001172 ORTHO05D001128 7.7e-06 55.1 62 41.9
Phvul.L001702 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 7.7e-06 55.1 63 42.9
RcHm_v2.0_Chr7g0218811 Rosa chinensis HOM05D010671 ORTHO05D013417 7.7e-06 55.1 64 34.4


User provided reference genes

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