Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 8.3e-41 169.9 81 100.0
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 2.0e-34 148.7 81 81.5
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 9.8e-34 146.4 81 80.2
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 9.8e-34 146.4 81 80.2
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.1e-32 142.9 81 79.0
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 4.1e-32 141.0 82 80.5
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 2.0e-31 138.7 81 80.2
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 7.8e-31 136.7 81 79.0
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 70.4
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 71.6
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 70.4
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 70.4
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 69.1
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 69.1
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 66.7
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 67.9
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 5.2e-27 124.0 80 68.8
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 70.4
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 67.9
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 67.9
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 69.1
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 67.9
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 70.4
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 66.7
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 67.9
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 67.9
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 67.9
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 65.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 67.9
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 65.4
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 5.7e-26 120.6 80 67.5
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 66.7
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 64.2
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 64.2
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 65.4
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 64.2
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 65.4
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 63.0
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 66.7
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 65.4
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 65.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 64.2
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 64.2
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 64.2
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 63.0
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 63.0
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 64.2
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 2.4e-24 115.2 80 66.2
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 66.7
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 5.4e-24 114.0 79 64.6
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 61.7
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 66.7
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 66.7
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 7.0e-24 113.6 82 65.9
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 61.7
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 61.7
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 61.7
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 61.7
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 63.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 65.4
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 7.8e-23 110.2 81 64.2
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 60.5
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 58.0
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 56.8
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 5.0e-22 107.5 82 63.4
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.5e-21 105.9 81 59.3
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 58.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 58.0
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 9.5e-21 103.2 81 60.5
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 56.8
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.6e-20 102.4 81 58.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 56.8
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 56.8
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 2.1e-20 102.1 79 58.2
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.7e-20 100.9 81 55.6
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.1e-19 99.8 79 58.2
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 3.1e-19 98.2 78 52.6
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.3e-17 92.8 76 56.6
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 4.9e-17 90.9 72 54.2
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 6.4e-17 90.5 79 50.6
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.9e-16 89.0 53 71.7
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.4e-16 88.6 57 64.9
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 2.7e-15 85.1 81 49.4
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 4.6e-15 84.3 78 52.6
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 7.8e-15 83.6 57 63.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 8.6e-14 80.1 59 61.0
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 1.9e-13 79.0 80 47.5
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.2e-12 76.3 59 59.3
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.6e-12 75.9 63 58.7
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 1.6e-12 75.9 59 61.0
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 3.6e-12 74.7 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 2.6e-10 68.6 77 44.2
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 4.9e-09 64.3 47 63.8
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 4.9e-09 64.3 47 63.8
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 8.3e-09 63.5 77 45.5
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 3.2e-08 61.6 45 57.8
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 2.7e-07 58.5 40 62.5
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 3.9e-06 54.7 41 51.2


User provided reference genes

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