Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc1413G10 Aethionema arabicum HOM05D005371 ORTHO05D006863 5.7e-40 167.2 86 100.0
Aa31LG11G10740 Aethionema arabicum HOM05D005371 ORTHO05D006863 3.1e-30 134.8 83 80.7
Thhalv10016095m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 3.8e-28 127.9 78 79.5
Sabra08G0160600 Salix brachista HOM05D005371 ORTHO05D006863 3.8e-28 127.9 80 76.2
Potri.008G200600 Populus trichocarpa HOM05D005371 ORTHO05D006863 6.5e-28 127.1 80 76.2
Sp3g05120 Schrenkiella parvula HOM05D005371 ORTHO05D006863 8.5e-28 126.7 83 73.5
AL3G17060 Arabidopsis lyrata HOM05D005371 ORTHO05D006863 1.1e-27 126.3 83 73.5
AT3G06200 Arabidopsis thaliana HOM05D005371 ORTHO05D006863 1.1e-27 126.3 83 73.5
Potri.010G029400 Populus trichocarpa HOM05D005371 ORTHO05D006863 1.1e-27 126.3 80 75.0
CARHR080720 Cardamine hirsuta HOM05D005371 ORTHO05D006863 1.5e-27 125.9 83 73.5
Sp6g25400 Schrenkiella parvula HOM05D005371 ORTHO05D006863 3.2e-27 124.8 78 74.4
CARHR194010 Cardamine hirsuta HOM05D005371 ORTHO05D006863 5.5e-27 124.0 78 75.6
Thhalv10021285m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 5.5e-27 124.0 83 69.9
Aa31LG5G16730 Aethionema arabicum HOM05D005371 ORTHO05D006863 7.2e-27 123.6 83 69.9
Carub.0003s0564 Capsella rubella HOM05D005371 ORTHO05D006863 7.2e-27 123.6 83 72.3
Sed0019484 Sechium edule HOM05D005371 ORTHO05D006863 3.6e-26 121.3 78 71.8
TWI53G1142 Tripterygium wilfordii HOM05D005371 ORTHO05D006863 3.6e-26 121.3 81 74.1
BcaC05g30047 Brassica carinata HOM05D005371 ORTHO05D006863 4.7e-26 120.9 83 67.5
Manes.03G186400 Manihot esculenta HOM05D005371 ORTHO05D006863 4.7e-26 120.9 78 74.4
PGR031G1359 Punica granatum HOM05D005371 ORTHO05D006863 6.1e-26 120.6 78 70.5
Ah.13g074330 Amaranthus hybridus HOM05D005371 ORTHO05D006863 1.0e-25 119.8 80 72.5
Carub.0006s1730 Capsella rubella HOM05D005371 ORTHO05D006863 1.0e-25 119.8 78 71.8
BcaC05g29797 Brassica carinata HOM05D005371 ORTHO05D006863 1.4e-25 119.4 83 67.5
C05p61030 Brassica napus HOM05D005371 ORTHO05D006863 1.4e-25 119.4 83 67.5
BolC5t34759H Brassica oleracea HOM05D005371 ORTHO05D006863 1.4e-25 119.4 83 67.5
Sed0017990 Sechium edule HOM05D005371 ORTHO05D006863 1.4e-25 119.4 78 70.5
TAR633G1547 Trochodendron aralioides HOM05D005371 ORTHO05D006863 1.4e-25 119.4 78 71.8
HPP92_012442 Vanilla planifolia HOM05D005371 ORTHO05D006863 1.4e-25 119.4 80 71.2
A05p41790 Brassica napus HOM05D005371 ORTHO05D006863 1.8e-25 119.0 83 67.5
BraA05t22898Z Brassica rapa HOM05D005371 ORTHO05D006863 1.8e-25 119.0 78 71.8
CiPaw.01G158300 Carya illinoinensis HOM05D005371 ORTHO05D006863 1.8e-25 119.0 83 63.9
COL.COLO4_21626 Corchorus olitorius HOM05D005371 ORTHO05D006863 1.8e-25 119.0 83 67.5
Gohir.A09G200400 Gossypium hirsutum HOM05D005371 ORTHO05D006863 2.3e-25 118.6 83 66.3
Thecc.04G219500 Theobroma cacao HOM05D005371 ORTHO05D006863 2.3e-25 118.6 83 67.5
CSS0011749 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 3.0e-25 118.2 78 73.1
CSS0026299 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 3.0e-25 118.2 78 73.1
Prupe.1G149000 Prunus persica HOM05D005371 ORTHO05D006863 3.0e-25 118.2 78 71.8
Cpa.g.sc16.46 Carica papaya HOM05D005371 ORTHO05D006863 5.2e-25 117.5 83 62.7
MELO3C006575.2 Cucumis melo HOM05D005371 ORTHO05D006863 5.2e-25 117.5 78 67.9
CsaV3_3G013820 Cucumis sativus L. HOM05D005371 ORTHO05D006863 5.2e-25 117.5 78 67.9
MBI13_g15010_MAGBIO Magnolia biondii HOM05D005371 ORTHO05D006863 5.2e-25 117.5 78 71.8
Dinv38368 Davidia involucrata HOM05D002181 ORTHO05D003287 6.7e-25 117.1 78 74.4
Gohir.D09G194600 Gossypium hirsutum HOM05D005371 ORTHO05D006863 6.7e-25 117.1 83 66.3
Gorai.006G218000 Gossypium raimondii HOM05D005371 ORTHO05D006863 6.7e-25 117.1 83 66.3
MD16G1181600 Malus domestica HOM05D005371 ORTHO05D006863 6.7e-25 117.1 78 73.1
Hund12213 Selenicereus undatus HOM05D005371 ORTHO05D006863 6.7e-25 117.1 78 71.8
Atru.chr4.2593 Acer truncatum HOM05D005371 ORTHO05D006863 8.8e-25 116.7 81 69.1
Actinidia00081 Actinidia chinensis HOM05D005371 ORTHO05D006863 1.2e-24 116.3 78 71.8
Aqoxy7G00162 Aquilegia oxysepala HOM05D005371 ORTHO05D006863 1.2e-24 116.3 80 70.0
ClCG05G005500 Citrullus lanatus HOM05D005371 ORTHO05D006863 1.2e-24 116.3 78 67.9
Lalb_Chr20g0118351 Lupinus albus HOM05D005371 ORTHO05D006863 1.2e-24 116.3 78 66.7
Ca_00612_v3 Cicer arietinum L. HOM05D005371 ORTHO05D006863 1.5e-24 115.9 78 65.4
ECA232G2257 Erigeron canadensis HOM05D005371 ORTHO05D006863 1.5e-24 115.9 82 70.7
TPR.G28919 Trifolium pratense HOM05D005371 ORTHO05D006863 2.0e-24 115.5 82 64.6
vmacro15298 Vaccinium macrocarpon HOM05D005371 ORTHO05D006863 2.0e-24 115.5 78 71.8
AUR62002624 Chenopodium quinoa HOM05D005371 ORTHO05D006863 2.6e-24 115.2 78 71.8
AUR62030040 Chenopodium quinoa HOM05D005371 ORTHO05D006863 2.6e-24 115.2 78 71.8
Ciclev10026219m.g Citrus clementina HOM05D005371 ORTHO05D006863 3.3e-24 114.8 81 64.2
DCAR_021293 Daucus carota HOM05D005371 ORTHO05D006863 3.3e-24 114.8 78 67.9
Medtr2g021320 Medicago truncatula HOM05D005371 ORTHO05D006863 3.3e-24 114.8 81 64.2
Nn2g14732 Nelumbo nucifera HOM05D005371 ORTHO05D006863 3.3e-24 114.8 83 68.7
SEGI_38554 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 3.3e-24 114.8 83 63.9
Sc19g0004630 Simmondsia chinensis HOM05D005371 ORTHO05D006863 3.3e-24 114.8 83 65.1
MSTRG.24760 Avicennia marina HOM05D005371 ORTHO05D006863 4.4e-24 114.4 78 67.9
EL10Ac6g13948 Beta vulgaris HOM05D005371 ORTHO05D006863 4.4e-24 114.4 78 70.5
Eucgr.B01158 Eucalyptus grandis HOM05D005371 ORTHO05D006863 4.4e-24 114.4 78 65.4
Gohir.A10G115500 Gossypium hirsutum HOM05D005371 ORTHO05D006863 4.4e-24 114.4 83 63.9
Gorai.011G168200 Gossypium raimondii HOM05D005371 ORTHO05D006863 4.4e-24 114.4 83 63.9
Hma1.2p1_3925F.1_g337960 Hydrangea macrophylla HOM05D005371 ORTHO05D006863 4.4e-24 114.4 78 70.5
Migut.G00256 Erythranthe guttata HOM05D005371 ORTHO05D006863 5.7e-24 114.0 78 67.9
MD13G1180900 Malus domestica HOM05D005371 ORTHO05D006863 5.7e-24 114.0 78 70.5
Psat1g184760 Pisum sativum HOM05D005371 ORTHO05D006863 5.7e-24 114.0 82 63.4
Lj6P663T68 Lonicera japonica HOM05D005371 ORTHO05D006863 7.5e-24 113.6 78 65.4
Os03g0320900 Oryza sativa ssp. japonica HOM05D005371 ORTHO05D006863 7.5e-24 113.6 80 70.0
Cc03_g02980 Coffea canephora HOM05D005371 ORTHO05D006863 9.7e-24 113.2 78 69.2
Rhsim02G0018900 Rhododendron simsii HOM05D005371 ORTHO05D006863 9.7e-24 113.2 78 69.2
Zm00001eb015260 Zea mays HOM05D005371 ORTHO05D006863 9.7e-24 113.2 80 68.8
Ciclev10005567m.g Citrus clementina HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 64.1
Duzib151G0238 Durio zibethinus HOM05D005371 ORTHO05D006863 1.3e-23 112.8 83 65.1
FvH4_4g14220 Fragaria vesca HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 66.7
FAN07G1015 Fragaria x ananassa HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 66.7
FAN12G2714 Fragaria x ananassa HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 66.7
HanXRQChr08g0218651 Helianthus annuus HOM05D005371 ORTHO05D006863 1.3e-23 112.8 85 67.1
Lj6g0013027 Lotus japonicus HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 62.8
Oeu037674.1 Olea europaea HOM05D005371 ORTHO05D006863 1.3e-23 112.8 78 67.9
MSTRG.3982 Avicennia marina HOM05D005371 ORTHO05D006863 1.7e-23 112.5 78 67.9
CAN.G652.5 Capsicum annuum HOM05D005371 ORTHO05D006863 1.7e-23 112.5 82 69.5
CDE06G0660 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 1.7e-23 112.5 78 66.7
Gohir.D10G151100 Gossypium hirsutum HOM05D005371 ORTHO05D006863 1.7e-23 112.5 83 62.7
TAR362G1168 Trochodendron aralioides HOM05D005371 ORTHO05D006863 1.7e-23 112.5 78 70.5
ATR0307G094 Amborella trichopoda HOM05D005371 ORTHO05D006863 2.2e-23 112.1 78 70.5
CDE02G4078 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 2.2e-23 112.1 78 66.7
Lsat_1_v5_gn_8_20540 Lactuca sativa HOM05D005371 ORTHO05D006863 2.2e-23 112.1 78 66.7
PSO135G0635 Papaver somniferum HOM05D005371 ORTHO05D006863 2.2e-23 112.1 78 66.7
Migut.N00142 Erythranthe guttata HOM05D005371 ORTHO05D006863 2.8e-23 111.7 79 63.3
RcHm_v2.0_Chr4g0418951 Rosa chinensis HOM05D005371 ORTHO05D006863 2.8e-23 111.7 78 65.4
Solyc11g005900.2 Solanum lycopersicum HOM05D005371 ORTHO05D006863 3.7e-23 111.3 78 67.9
Sopen11g001840 Solanum pennellii HOM05D005371 ORTHO05D006863 3.7e-23 111.3 78 67.9
PGSC0003DMG400035738 Solanum tuberosum HOM05D005371 ORTHO05D006863 3.7e-23 111.3 78 67.9
Peaxi162Scf00589g00036 Petunia axillaris HOM05D005371 ORTHO05D006863 4.8e-23 110.9 78 66.7
HanXRQChr10g0304241 Helianthus annuus HOM05D005371 ORTHO05D006863 6.3e-23 110.5 87 63.2
QL06p005861 Quercus lobata HOM05D005371 ORTHO05D006863 6.3e-23 110.5 83 59.0
Atru.chr4.2595 Acer truncatum HOM05D005371 ORTHO05D006863 8.3e-23 110.2 75 69.3
Nitab4.5_0007396g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 8.3e-23 110.2 78 66.7
Nitab4.5_0012725g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 8.3e-23 110.2 78 66.7
CANSAT78G0247 Cannabis sativa HOM05D005371 ORTHO05D006863 1.1e-22 109.8 78 65.4
Haze_00980 Corylus avellana HOM05D005371 ORTHO05D006863 1.4e-22 109.4 81 60.5
Haze_00986 Corylus avellana HOM05D005371 ORTHO05D006863 1.4e-22 109.4 81 60.5
Haze_00989 Corylus avellana HOM05D005371 ORTHO05D006863 1.4e-22 109.4 81 60.5
unitig_8.g3082 Utricularia gibba HOM05D001103 ORTHO05D000954 1.4e-22 109.4 78 64.1
Cfa015560 Carpinus fangiana HOM05D005371 ORTHO05D006863 1.8e-22 109.0 81 60.5
Glyma.13G210400 Glycine max HOM05D005371 ORTHO05D006863 2.4e-22 108.6 78 60.3
Oeu023656.1 Olea europaea HOM05D005371 ORTHO05D006863 3.1e-22 108.2 78 65.4
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 3.1e-22 108.2 78 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1044 Anthoceros agrestis HOM05D005371 ORTHO05D006863 7.0e-22 107.1 83 59.0
SMO347G0347 Selaginella moellendorffii HOM05D005371 ORTHO05D006863 7.0e-22 107.1 83 54.2
SGA_v2.0_scaffold107G30774 Striga asiatica HOM05D005371 ORTHO05D006863 7.0e-22 107.1 80 61.2
Phvul.006G155400 Phaseolus vulgaris HOM05D005371 ORTHO05D006863 9.1e-22 106.7 78 60.3
Pp3c7_19190 Physcomitrium patens HOM05D005371 ORTHO05D006863 1.2e-21 106.3 78 57.7
CBR_g4816 Chara braunii HOM05D005371 ORTHO05D006863 1.6e-21 105.9 78 59.0
Glyma.15G102400 Glycine max HOM05D005371 ORTHO05D006863 2.0e-21 105.5 78 59.0
MD12G1097700 Malus domestica HOM05D005371 ORTHO05D006863 2.0e-21 105.5 76 68.4
Mapoly0103s0074 Marchantia polymorpha HOM05D005371 ORTHO05D006863 2.0e-21 105.5 78 60.3
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 5.9e-21 104.0 78 60.3
CsaV3_3G013810 Cucumis sativus L. HOM05D005371 ORTHO05D006863 1.0e-20 103.2 78 61.5
MELO3C006574.2 Cucumis melo HOM05D005371 ORTHO05D006863 8.5e-20 100.1 78 59.0
CBR_g11013 Chara braunii HOM05D005371 ORTHO05D006863 5.5e-19 97.4 78 55.1
Actinidia08521 Actinidia chinensis HOM05D005371 ORTHO05D006863 1.6e-18 95.9 61 73.8
CsaV3_7G008570 Cucumis sativus L. HOM05D005371 ORTHO05D006863 2.7e-18 95.1 76 60.5
PRCOL_00006380 Prasinoderma coloniale HOM05D005371 ORTHO05D006863 8.3e-15 83.6 83 47.0
MCO11G301 Micromonas commoda HOM05D005371 ORTHO05D006863 1.1e-14 83.2 83 43.4
Aqoxy7G02261 Aquilegia oxysepala HOM05D005371 ORTHO05D000006 5.9e-13 77.4 85 47.1
Cre02.g084950 Chlamydomonas reinhardtii HOM05D005371 ORTHO05D006863 3.8e-12 74.7 74 47.3
FAN17G2777 Fragaria x ananassa HOM05D005371 ORTHO05D006863 4.2e-11 71.2 50 68.0
Aa31sc279G10 Aethionema arabicum HOM05D005371 ORTHO05D006863 8.0e-10 67.0 55 61.8
HPP92_028178 Vanilla planifolia HOM05D005371 ORTHO05D006863 6.3e-07 57.4 46 56.5
TAR362G1313 Trochodendron aralioides HOM05D005371 ORTHO05D006863 1.4e-06 56.2 88 37.5
Dinv44470 Davidia involucrata HOM05D005371 ORTHO05D006863 9.2e-06 53.5 70 40.0


User provided reference genes

Program Settings