Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc1345G10 Aethionema arabicum HOM05D001137 ORTHO05D058945 2.2e-45 185.3 93 100.0
Aa31LG11G5290 Aethionema arabicum HOM05D001137 ORTHO05D001967 3.9e-18 94.7 52 90.4
AT5G04420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 2.6e-14 82.0 55 76.4
Thhalv10013283m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 2.6e-14 82.0 54 77.8
AL1G38560 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 9.9e-14 80.1 55 74.5
Carub.0006s0336 Capsella rubella HOM05D001137 ORTHO05D001967 9.9e-14 80.1 55 72.7
THA.LOC104826971 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 1.3e-13 79.7 52 78.8
CARHR208890 Cardamine hirsuta HOM05D001137 ORTHO05D001967 2.9e-13 78.6 52 76.9
AL6G14040 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 1.4e-12 76.3 55 72.7
Sp6g38320 Schrenkiella parvula HOM05D001137 ORTHO05D001967 7.1e-12 73.9 54 68.5
C03p02040 Brassica napus HOM05D001137 ORTHO05D001967 2.1e-11 72.4 52 73.1
BolC3t12757H Brassica oleracea HOM05D001137 ORTHO05D001967 2.1e-11 72.4 52 73.1
BcaB01g05897 Brassica carinata HOM05D001137 ORTHO05D001967 6.0e-11 70.9 52 73.1
COL.COLO4_32891 Corchorus olitorius HOM05D001137 ORTHO05D001967 1.0e-10 70.1 52 71.2
BcaNung04622 Brassica carinata HOM05D001137 ORTHO05D001967 1.3e-10 69.7 52 69.2
GSVIVG01016168001 Vitis vinifera HOM05D001137 ORTHO05D001967 3.0e-10 68.6 52 67.3
Sed0009747 Sechium edule HOM05D001137 ORTHO05D001967 1.5e-09 66.2 52 59.6
A03p01670 Brassica napus HOM05D001137 ORTHO05D001967 1.9e-09 65.9 52 67.3
BraA03t09542Z Brassica rapa HOM05D001137 ORTHO05D001967 1.9e-09 65.9 52 67.3
Thecc.10G089100 Theobroma cacao HOM05D001137 ORTHO05D001967 2.5e-09 65.5 52 67.3
Cpa.g.sc706.5 Carica papaya HOM05D001137 ORTHO05D001967 3.3e-09 65.1 52 63.5
ClCG08G007910 Citrullus lanatus HOM05D001137 ORTHO05D001967 4.3e-09 64.7 52 59.6
Gohir.D05G292500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 4.3e-09 64.7 52 63.5
Gorai.009G308900 Gossypium raimondii HOM05D001137 ORTHO05D001967 4.3e-09 64.7 52 63.5
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 4.3e-09 64.7 52 61.5
ECA238G1049 Erigeron canadensis HOM05D001137 ORTHO05D001967 1.3e-08 63.2 52 57.7
Gohir.A05G291400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.3e-08 63.2 52 61.5
Duzib114G0923 Durio zibethinus HOM05D001137 ORTHO05D001967 2.8e-08 62.0 50 68.0
Hund06762 Selenicereus undatus HOM05D001137 ORTHO05D001967 2.8e-08 62.0 66 53.0
Nn6g35207 Nelumbo nucifera HOM05D001137 ORTHO05D001967 3.6e-08 61.6 52 63.5
TPR.G37727 Trifolium pratense HOM05D001137 ORTHO05D001967 3.6e-08 61.6 52 59.6
Medtr1g090740 Medicago truncatula HOM05D001137 ORTHO05D001967 4.8e-08 61.2 52 59.6
MELO3C019846.2 Cucumis melo HOM05D001137 ORTHO05D001967 8.1e-08 60.5 52 55.8
CsaV3_2G021010 Cucumis sativus L. HOM05D001137 ORTHO05D001967 8.1e-08 60.5 52 55.8
Phvul.007G140800 Phaseolus vulgaris HOM05D001137 ORTHO05D001967 8.1e-08 60.5 52 59.6
TWI38G2221 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 8.1e-08 60.5 50 66.0
Lsat_1_v5_gn_8_17681 Lactuca sativa HOM05D001137 ORTHO05D001967 1.1e-07 60.1 52 55.8
DCAR_006390 Daucus carota HOM05D001137 ORTHO05D001967 1.4e-07 59.7 52 57.7
Migut.F01684 Erythranthe guttata HOM05D001137 ORTHO05D001967 1.4e-07 59.7 52 55.8
Glyma.20G191900 Glycine max HOM05D001137 ORTHO05D001967 1.4e-07 59.7 52 57.7
TWI63G1814 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 1.4e-07 59.7 50 64.0
Glyma.10G198000 Glycine max HOM05D001137 ORTHO05D001967 1.8e-07 59.3 52 57.7
MD07G1074000 Malus domestica HOM05D001137 ORTHO05D001967 1.8e-07 59.3 52 57.7
Psat6g173160 Pisum sativum HOM05D001137 ORTHO05D001967 1.8e-07 59.3 52 57.7
Prupe.2G091900 Prunus persica HOM05D001137 ORTHO05D001967 1.8e-07 59.3 52 57.7
Rhsim09G0145600 Rhododendron simsii HOM05D001137 ORTHO05D001967 1.8e-07 59.3 53 62.3
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 1.8e-07 59.3 52 57.7
Atru.chr12.899 Acer truncatum HOM05D001137 ORTHO05D001967 2.4e-07 58.9 52 55.8
arahy.Tifrunner.gnm1.ann1.F394NJ Arachis hypogaea HOM05D001137 ORTHO05D001967 2.4e-07 58.9 52 55.8
arahy.Tifrunner.gnm1.ann1.UDP5HN Arachis hypogaea HOM05D001137 ORTHO05D001967 2.4e-07 58.9 52 55.8
CSS0018144 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 2.4e-07 58.9 55 56.4
ECA233G4897 Erigeron canadensis HOM05D001137 ORTHO05D001967 2.4e-07 58.9 52 55.8
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.4e-07 58.9 52 57.7
AUR62041798 Chenopodium quinoa HOM05D001137 ORTHO05D001967 3.1e-07 58.5 52 61.5
Ca_10452_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 3.1e-07 58.5 52 57.7
VMungo0720G2362 Vigna mungo HOM05D001137 ORTHO05D001967 3.1e-07 58.5 52 57.7
Sc20g0001540 Simmondsia chinensis HOM05D001137 ORTHO05D001967 4.0e-07 58.2 52 59.6
Ciclev10031292m.g Citrus clementina HOM05D001137 ORTHO05D001967 5.3e-07 57.8 52 55.8
HanXRQChr14g0455821 Helianthus annuus HOM05D001137 ORTHO05D001967 5.3e-07 57.8 52 53.8
Cc02_g10600 Coffea canephora HOM05D001137 ORTHO05D001967 6.9e-07 57.4 52 57.7
RcHm_v2.0_Chr1g0335251 Rosa chinensis HOM05D001137 ORTHO05D001967 6.9e-07 57.4 52 53.8
FAN06G0232 Fragaria x ananassa HOM05D001137 ORTHO05D001967 9.0e-07 57.0 52 51.9
QL08p053120 Quercus lobata HOM05D001137 ORTHO05D001967 9.0e-07 57.0 52 59.6
CSS0017275 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 1.2e-06 56.6 52 53.8
Oeu016291.1 Olea europaea HOM05D001137 ORTHO05D001967 1.5e-06 56.2 50 52.0
AL1G55960 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 2.0e-06 55.8 45 66.7
Lj3A936G52 Lonicera japonica HOM05D001137 ORTHO05D001967 2.0e-06 55.8 52 55.8
TAR623G1553 Trochodendron aralioides HOM05D001137 ORTHO05D001967 2.0e-06 55.8 52 57.7
HanXRQChr08g0218271 Helianthus annuus HOM05D001137 ORTHO05D001967 2.6e-06 55.5 50 54.0
Lj2A24T64 Lonicera japonica HOM05D001137 ORTHO05D001967 4.4e-06 54.7 58 48.3
Lalb_Chr02g0151091 Lupinus albus HOM05D001137 ORTHO05D001967 4.4e-06 54.7 52 53.8
Os02g0822800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D001967 4.4e-06 54.7 52 53.8
Dinv36364 Davidia involucrata HOM05D001137 ORTHO05D001967 5.8e-06 54.3 52 53.8
FAN01G2662 Fragaria x ananassa HOM05D001137 ORTHO05D001967 5.8e-06 54.3 52 50.0
FAN03G0121 Fragaria x ananassa HOM05D001137 ORTHO05D001967 5.8e-06 54.3 52 50.0
FAN10G1487 Fragaria x ananassa HOM05D001137 ORTHO05D001967 5.8e-06 54.3 52 50.0
MD02G1242500 Malus domestica HOM05D001137 ORTHO05D001967 5.8e-06 54.3 52 53.8
Manes.10G052700 Manihot esculenta HOM05D001137 ORTHO05D001967 5.8e-06 54.3 55 54.5
MSTRG.8119 Avicennia marina HOM05D001137 ORTHO05D001967 7.6e-06 53.9 55 52.7
CiPaw.01G265600 Carya illinoinensis HOM05D001137 ORTHO05D001967 7.6e-06 53.9 52 53.8
AUR62041266 Chenopodium quinoa HOM05D001137 ORTHO05D001967 7.6e-06 53.9 52 55.8
PSO339G2160 Papaver somniferum HOM05D001137 ORTHO05D001967 9.9e-06 53.5 52 53.8
unitig_26.g9464 Utricularia gibba HOM05D001137 ORTHO05D001967 9.9e-06 53.5 52 50.0


User provided reference genes

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