Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 2.1e-39 165.2 84 100.0
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 1.5e-24 115.9 76 78.9
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.5e-24 115.9 74 75.7
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 7.3e-24 113.6 74 79.7
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 7.3e-24 113.6 74 79.7
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 1.2e-23 112.8 74 79.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.6e-23 112.5 74 78.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 2.1e-23 112.1 74 78.4
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 6.2e-23 110.5 70 81.4
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 6.2e-23 110.5 70 81.4
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 6.2e-23 110.5 70 81.4
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 8.1e-23 110.2 74 77.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 3.1e-22 108.2 74 77.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 8.9e-22 106.7 69 79.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 7.5e-21 103.6 76 72.4
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.9e-19 99.0 73 68.5
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.9e-19 99.0 83 60.2
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.4e-19 98.6 83 60.2
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 3.2e-19 98.2 72 65.3
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 5.4e-19 97.4 68 69.1
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 5.4e-19 97.4 68 69.1
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 7.1e-19 97.1 72 65.3
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 9.2e-19 96.7 70 67.1
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 9.2e-19 96.7 74 64.9
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 9.2e-19 96.7 62 72.6
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.2e-18 96.3 74 67.6
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.2e-18 96.3 74 64.9
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 2.1e-18 95.5 74 66.2
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 3.5e-18 94.7 71 63.4
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.5e-18 94.7 74 66.2
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.5e-18 94.7 69 68.1
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 6.0e-18 94.0 70 67.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 7.8e-18 93.6 74 64.9
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 7.8e-18 93.6 57 80.7
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.3e-17 92.8 74 62.2
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.3e-17 92.8 74 60.8
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.3e-17 92.8 74 63.5
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 3.0e-17 91.7 70 65.7
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.9e-17 91.3 74 63.5
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 3.9e-17 91.3 74 60.8
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 5.1e-17 90.9 74 62.2
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 5.1e-17 90.9 74 64.9
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 5.1e-17 90.9 74 62.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 5.1e-17 90.9 55 76.4
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 6.6e-17 90.5 74 62.2
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 6.6e-17 90.5 66 63.6
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 8.6e-17 90.1 57 75.4
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.1e-16 89.7 74 59.5
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.1e-16 89.7 72 59.7
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.1e-16 89.7 74 62.2
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.5e-16 89.4 79 60.8
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.5e-16 89.4 74 64.9
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.9e-16 89.0 70 62.9
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.9e-16 89.0 70 64.3
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 2.5e-16 88.6 77 59.7
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.3e-16 87.8 74 63.5
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 4.3e-16 87.8 55 72.7
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-16 87.4 70 64.3
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-16 87.4 70 64.3
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-16 87.4 70 64.3
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 7.3e-16 87.0 70 64.3
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 9.5e-16 86.7 63 69.8
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 9.5e-16 86.7 74 60.8
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 9.5e-16 86.7 71 62.0
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 9.5e-16 86.7 71 62.0
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 9.5e-16 86.7 68 64.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 1.2e-15 86.3 70 60.0
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.2e-15 86.3 72 59.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.2e-15 86.3 72 59.7
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 1.2e-15 86.3 72 63.9
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.6e-15 85.9 70 61.4
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 1.6e-15 85.9 72 59.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 1.6e-15 85.9 66 62.1
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.6e-15 85.9 62 67.7
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 1.6e-15 85.9 62 67.7
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 4.7e-15 84.3 70 65.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 8.1e-15 83.6 74 59.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 8.1e-15 83.6 72 61.1
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.1e-14 83.2 74 60.8
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.1e-14 83.2 73 61.6
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 1.1e-14 83.2 74 55.4
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.1e-14 83.2 73 57.5
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 3.1e-14 81.6 56 66.1
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.0e-14 81.3 58 65.5
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 4.0e-14 81.3 71 59.2
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.2e-14 80.9 72 58.3
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 5.2e-14 80.9 70 62.9
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.8e-14 80.5 55 65.5
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 8.9e-14 80.1 53 71.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.5e-13 79.3 74 56.8
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 2.0e-13 79.0 56 67.9
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.0e-13 79.0 80 55.0
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 3.8e-12 74.7 74 56.8
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 4.9e-12 74.3 60 60.0
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 4.1e-11 71.2 77 50.6
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 5.4e-11 70.9 75 53.3
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 5.4e-11 70.9 69 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 7.8e-10 67.0 57 59.6
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 2.3e-09 65.5 74 45.9
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 2.5e-08 62.0 43 69.8
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.6e-07 59.3 43 65.1
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 1.8e-06 55.8 37 70.3


User provided reference genes

Program Settings