Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 4.3e-127 458.0 229 100.0
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 96.1
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 95.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 95.2
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 6.0e-121 437.6 238 92.0
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 94.3
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 92.1
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 92.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 6.6e-120 434.1 229 92.6
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.9e-119 432.6 229 92.1
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 7.3e-119 430.6 256 85.5
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.3e-118 429.9 229 91.7
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.0e-117 424.9 229 90.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.0e-117 424.9 229 90.4
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 89.1
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 89.4
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 89.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 90.3
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 88.5
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 89.0
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.8e-115 418.3 227 88.5
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 87.7
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 86.5
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.4e-115 417.5 227 89.0
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 6.4e-115 417.5 227 89.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 6.4e-115 417.5 227 88.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 88.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 89.0
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.4e-114 416.4 227 88.5
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.4
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 88.5
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 88.1
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.2e-114 415.2 226 88.9
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.2e-114 415.2 226 88.9
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 89.0
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.5
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.1
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 5.4e-114 414.5 227 88.5
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 87.7
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 88.1
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 88.5
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-113 413.3 226 88.5
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 88.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 88.1
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 87.7
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 87.7
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 88.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 87.7
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 86.8
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 86.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 87.2
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 87.2
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.3
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 87.2
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 86.8
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 88.1
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.3
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 85.9
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 85.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 86.8
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 85.5
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 8.7e-112 407.1 229 85.2
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 85.9
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 8.7e-112 407.1 229 85.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.3
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.9
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.1e-110 400.6 227 84.1
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 84.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.4e-109 399.8 227 85.0
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.4e-109 399.8 229 85.2
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 3.1e-109 398.7 229 84.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.2e-108 396.7 227 84.6
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.0e-108 396.0 220 87.3
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 5.8e-108 394.4 227 81.9
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 7.6e-108 394.0 227 83.3
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 7.6e-108 394.0 227 84.6
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 8.4e-107 390.6 227 85.0
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.4e-106 389.8 227 80.6
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 80.2
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.2e-105 386.7 226 80.5
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 2.1e-105 386.0 226 81.0
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 2.7e-105 385.6 227 84.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 3.5e-105 385.2 227 82.8
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 8.7e-104 380.6 229 82.5
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 79.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 8.2e-102 374.0 227 78.0
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 4.9e-99 364.8 201 87.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.1e-98 363.6 211 83.4
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.1e-98 363.6 202 86.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.5e-98 362.5 204 85.3
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 2.1e-97 359.4 227 74.9
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.3e-96 356.7 227 78.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.3e-96 355.9 227 74.4
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.3e-95 352.1 210 79.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.2e-94 349.4 191 89.5
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.8e-94 349.0 190 90.0
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.8e-94 349.0 227 71.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.3e-94 347.8 250 71.6
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.1e-93 347.1 191 88.0
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.4e-93 346.7 200 84.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.8e-93 346.3 190 87.9
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.3e-93 344.7 226 72.6
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.3e-93 344.7 226 72.6
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 9.0e-93 344.0 219 79.0
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 3.4e-92 342.0 187 89.3
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.0e-91 340.5 231 74.9
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 2.5e-90 335.9 185 88.6
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 2.1e-89 332.8 226 69.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.1e-89 332.8 227 74.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.5e-87 326.6 185 84.3
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 5.9e-84 314.7 226 69.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.6e-81 305.4 162 92.0
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.7e-78 295.4 164 87.2
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 4.5e-76 288.5 160 85.6
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.9e-76 288.1 162 84.6
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.0e-75 287.3 357 48.2
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.4e-61 240.4 131 87.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 6.8e-56 221.5 190 60.0
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.3e-54 214.5 120 83.3
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-38 164.1 135 64.4
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.4e-30 135.2 69 97.1
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 2.2e-22 110.2 62 74.2
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.6e-17 92.8 124 47.6
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 6.2e-17 92.0 152 39.5
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.4e-15 86.3 45 86.7
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.2e-14 83.6 81 51.9
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 65.4
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.7e-11 73.9 64 54.7
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-08 64.7 51 62.7
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.4e-08 64.3 82 48.8
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 1.3e-06 57.8 26 96.2


User provided reference genes

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