Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 0.0e+00 1496.9 803 100.0
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 0.0e+00 1238.0 744 88.8
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.9e-210 736.1 613 71.3
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 4.9e-186 655.6 757 57.3
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 8.7e-183 644.8 772 55.7
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.5e-179 634.0 766 54.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.9e-170 602.4 764 54.6
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.6e-163 580.1 768 52.2
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.0e-162 578.2 766 53.0
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.9e-161 573.9 768 53.4
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.3e-146 524.6 768 50.7
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.2e-144 518.1 760 49.9
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.5e-142 511.1 759 50.6
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 4.1e-140 503.1 770 49.1
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 1.7e-138 497.7 766 50.0
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 2.8e-120 437.2 715 48.7
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 9.2e-84 315.8 764 35.1
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.1e-83 314.7 758 35.5
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.6e-83 313.5 758 35.5
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.0e-83 313.2 758 36.1
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 5.2e-79 300.1 765 35.9
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.5e-78 298.5 837 33.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.0e-78 298.1 782 35.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.9e-77 294.3 764 34.0
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 4.2e-76 290.4 909 31.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.6e-75 287.0 785 33.6
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.7e-74 285.0 813 33.6
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.3e-74 284.6 884 32.9
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 6.6e-74 283.1 768 34.9
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.1e-73 282.3 784 33.8
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.3e-72 278.9 790 34.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.6e-72 277.3 761 33.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.1e-71 275.8 806 32.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.8e-71 275.0 788 32.7
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 5.3e-71 273.5 757 34.2
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.2e-69 268.1 786 32.4
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 3.8e-69 267.3 781 32.1
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.0e-67 260.0 761 32.1
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.0e-67 260.0 761 32.1
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 7.4e-65 253.1 838 32.6
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 7.4e-65 253.1 811 32.4
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.6e-64 251.9 158 82.3
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.0e-62 245.0 772 34.5
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.5e-62 243.8 773 32.6
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 7.6e-62 243.0 786 31.4
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.8e-61 240.7 845 29.5
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 4.9e-61 240.4 913 29.9
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.9e-60 238.4 860 29.7
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.9e-60 238.4 765 32.0
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 7.1e-60 236.5 717 31.9
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.5e-59 234.2 696 33.6
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 3.5e-59 234.2 770 31.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 4.6e-59 233.8 801 31.1
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.3e-58 232.3 684 34.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.9e-58 230.7 684 34.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 8.7e-58 229.6 755 31.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 4.3e-57 227.3 817 30.1
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 4.3e-57 227.3 774 30.9
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 7.4e-57 226.5 881 29.7
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 3.7e-56 224.2 762 29.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.7e-56 224.2 812 29.9
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 2.4e-55 221.5 794 30.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 4.5e-54 217.2 782 32.1
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 2.2e-53 214.9 839 29.9
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.9e-53 214.5 780 31.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.4e-52 212.2 865 29.0
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.2e-52 211.1 816 30.3
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.6e-51 208.8 767 30.2
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.1e-51 208.4 760 28.8
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 3.0e-50 204.5 771 28.9
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 8.7e-50 203.0 769 29.6
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.5e-49 202.2 772 30.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 4.3e-49 200.7 804 29.7
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 2.2e-48 198.4 768 29.6
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.8e-48 198.0 760 29.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 3.7e-48 197.6 770 29.7
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 4.8e-48 197.2 681 31.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 8.2e-48 196.4 776 29.6
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.8e-47 195.3 793 29.1
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 1.8e-47 195.3 393 41.2
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 4.1e-47 194.1 758 28.8
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 5.3e-47 193.7 950 26.2
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 6.9e-47 193.4 723 30.6
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 4.5e-46 190.7 667 31.2
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.7e-45 188.7 725 30.3
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.1e-44 186.0 699 30.2
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.9e-44 185.3 773 29.6
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.5e-44 184.9 755 28.6
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.2e-44 184.1 811 27.9
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.5e-44 183.7 788 28.9
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 6.1e-43 180.3 927 27.1
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 2.3e-42 178.3 768 29.0
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.5e-41 175.6 808 28.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.7e-41 173.7 756 29.5
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 7.4e-41 173.3 834 27.8
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 7.4e-41 173.3 751 27.4
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 9.7e-41 172.9 793 28.6
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 3.7e-40 171.0 740 26.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-39 169.1 446 34.5
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.4e-39 169.1 942 27.0
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 5.3e-39 167.2 707 28.1
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.6e-38 164.9 942 26.8
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 4.5e-38 164.1 723 28.2
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 7.7e-38 163.3 790 28.0
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.9e-36 158.7 498 32.7
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.5e-36 158.3 441 32.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 7.2e-36 156.8 773 28.2
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 3.0e-34 151.4 608 29.3
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 3.9e-34 151.0 952 26.7
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 6.7e-34 150.2 558 30.3
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 8.8e-34 149.8 309 38.5
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 8.8e-34 149.8 671 27.3
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.6e-33 148.3 769 27.3
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.7e-32 145.6 772 26.6
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.2e-32 145.2 748 27.3
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 1.5e-30 139.0 466 31.5
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.6e-30 138.3 669 29.1
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-28 132.5 96 68.8
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.0e-26 126.3 707 25.9
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.5e-25 122.5 682 28.7
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 2.6e-25 121.7 389 32.4
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.2e-24 116.7 96 64.6
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.3e-23 114.0 86 66.3
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 7.0e-23 113.6 105 59.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 7.7e-22 110.2 827 23.7
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.8e-21 107.8 342 32.7
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 6.5e-21 107.1 544 27.0
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.4e-18 99.4 770 24.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.0e-18 98.2 95 56.8
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 6.7e-18 97.1 88 54.5
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.2e-17 96.3 810 24.2
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.4e-17 94.4 95 57.9
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 4.8e-16 90.9 99 48.5
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 4.1e-15 87.8 137 46.0
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.7e-14 85.1 83 49.4
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 5.9e-14 84.0 402 30.6
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 9.4e-12 76.6 142 37.3
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.2e-11 76.3 44 72.7
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.6e-11 74.7 84 46.4
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 3.6e-11 74.7 251 32.3
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 2.3e-10 72.0 96 45.8
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 3.0e-10 71.6 755 25.2
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 4.8e-08 64.3 684 23.5
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 2.0e-06 58.9 55 58.2


User provided reference genes

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