Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 2.8e-61 238.4 119 100.0
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-20 102.8 62 83.9
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-15 87.0 49 89.8
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.4e-15 86.7 49 87.8
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.4e-15 86.7 49 87.8
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 1.8e-15 86.3 49 87.8
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 85.7
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.3e-15 85.9 49 87.8
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 6.7e-15 84.3 49 85.7
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 85.7
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 8.8e-15 84.0 49 83.7
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.5e-14 83.2 49 85.7
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.5e-14 83.2 49 81.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.5e-14 83.2 49 83.7
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.5e-14 83.2 49 81.6
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 2.0e-14 82.8 49 83.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 2.0e-14 82.8 49 83.7
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.0e-14 82.8 49 83.7
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.0e-14 82.8 49 83.7
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.5e-14 82.4 49 81.6
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 2.5e-14 82.4 49 81.6
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.5e-14 82.4 49 81.6
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 3.3e-14 82.0 49 81.6
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 3.3e-14 82.0 49 81.6
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 3.3e-14 82.0 49 81.6
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 3.3e-14 82.0 49 81.6
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 4.3e-14 81.6 49 81.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 4.3e-14 81.6 49 81.6
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 5.7e-14 81.3 49 81.6
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 5.7e-14 81.3 49 79.6
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 7.4e-14 80.9 49 81.6
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 7.4e-14 80.9 49 79.6
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 7.4e-14 80.9 49 79.6
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 7.4e-14 80.9 49 81.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.4e-14 80.9 49 79.6
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 79.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 9.7e-14 80.5 49 81.6
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 81.6
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.3e-13 80.1 49 79.6
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.7e-13 79.7 49 79.6
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.7e-13 79.7 49 79.6
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.7e-13 79.7 49 81.6
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.7e-13 79.7 49 79.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.2e-13 79.3 49 79.6
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 2.2e-13 79.3 49 77.6
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 2.2e-13 79.3 49 79.6
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 2.2e-13 79.3 49 77.6
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.2e-13 79.3 49 77.6
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 2.8e-13 79.0 49 79.6
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 2.8e-13 79.0 49 77.6
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 3.7e-13 78.6 49 79.6
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 3.7e-13 78.6 49 75.5
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 3.7e-13 78.6 49 79.6
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 4.8e-13 78.2 49 79.6
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 4.8e-13 78.2 49 79.6
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 4.8e-13 78.2 49 79.6
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 4.8e-13 78.2 49 79.6
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 6.3e-13 77.8 49 79.6
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 6.3e-13 77.8 49 77.6
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 77.6
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 77.6
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 79.6
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 79.6
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 79.6
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 79.6
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 79.6
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 77.6
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 8.2e-13 77.4 49 77.6
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.1e-12 77.0 49 79.6
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.1e-12 77.0 49 77.6
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.1e-12 77.0 49 77.6
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.4e-12 76.6 49 73.5
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.4e-12 76.6 49 75.5
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 4.1e-12 75.1 49 77.6
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 6.9e-12 74.3 49 73.5
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 6.9e-12 74.3 49 73.5
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 6.9e-12 74.3 49 77.6
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.2e-11 73.6 49 73.5
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.2e-11 73.6 49 69.4
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.2e-11 73.6 49 73.5
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.0e-11 72.8 57 59.6
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.6e-11 72.4 49 73.5
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.6e-11 72.4 49 67.3
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.6e-11 72.4 49 71.4
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.4e-11 72.0 49 71.4
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.0e-10 70.5 49 67.3
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.3e-10 70.1 49 67.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.7e-10 69.7 49 69.4
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.7e-10 69.7 49 67.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.7e-10 69.7 49 67.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 2.9e-10 68.9 57 61.4
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 5.0e-10 68.2 49 71.4
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 8.5e-10 67.4 49 63.3
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.4e-09 66.6 41 78.0
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.5e-09 65.9 49 65.3
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 5.5e-09 64.7 49 65.3
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 7.2e-09 64.3 49 67.3
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 9.4e-09 63.9 49 65.3
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 9.4e-09 63.9 49 65.3
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 9.4e-09 63.9 49 65.3
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 9.4e-09 63.9 49 65.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.4e-09 63.9 49 65.3
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.2e-08 63.5 49 65.3
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.7e-08 62.4 49 65.3
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.6e-08 62.0 49 61.2
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 6.1e-08 61.2 49 61.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.0e-07 60.5 49 63.3
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.0e-07 60.5 49 61.2


User provided reference genes

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