Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 2.2e-224 781.9 394 100.0
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 2.5e-74 283.5 150 96.7
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 3.0e-72 276.6 147 96.6
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 3.0e-72 276.6 147 96.6
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 2.7e-68 263.5 133 100.0
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.6e-68 262.7 235 67.2
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.6e-68 262.7 235 67.2
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 7.8e-68 261.9 189 76.2
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 3.9e-67 259.6 133 99.2
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 3.6e-65 253.1 133 97.0
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 3.6e-65 253.1 133 97.0
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 4.7e-65 252.7 129 99.2
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 4.7e-65 252.7 127 100.0
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 4.7e-65 252.7 127 100.0
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 1.8e-64 250.8 135 95.6
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 2.3e-64 250.4 139 92.1
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 3.1e-64 250.0 133 96.2
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 3.1e-64 250.0 133 96.2
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 8.9e-64 248.4 133 95.5
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 2.6e-63 246.9 137 94.2
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.4e-63 246.1 133 94.7
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.4e-63 246.1 133 94.7
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 4.4e-63 246.1 133 94.7
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 7.5e-63 245.4 133 94.7
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 7.5e-63 245.4 133 94.7
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 2.4e-61 240.4 133 93.2
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 2.4e-61 240.4 140 87.9
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 4.1e-61 239.6 129 94.6
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 4.1e-61 239.6 137 90.5
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 7.0e-61 238.8 129 94.6
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 7.0e-61 238.8 133 91.7
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 2.1e-60 237.3 133 92.5
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 3.5e-60 236.5 129 93.0
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 5.0e-59 232.6 131 91.6
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.1e-58 231.5 137 88.3
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 1.9e-58 230.7 129 91.5
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 4.7e-57 226.1 127 92.1
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 1.2e-55 221.5 133 85.0
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.4e-55 219.5 132 83.3
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.3e-51 208.0 133 79.7
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.3e-51 208.0 133 79.7
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 3.6e-49 199.9 109 93.6
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 7.6e-47 192.2 99 98.0
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 3.8e-46 189.9 103 95.1
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.9e-46 189.5 150 72.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 4.2e-45 186.4 114 83.3
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 7.1e-45 185.7 103 92.2
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.0e-43 180.3 148 66.9
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 7.3e-42 175.6 95 95.8
Thhalv10015055m.g Eutrema salsugineum HOM05D010562 ORTHO05D031111 2.9e-38 163.7 91 93.4
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 8.4e-38 162.2 151 62.9
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 5.6e-34 149.4 82 93.9
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 3.6e-33 146.7 82 89.0
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 3.1e-32 143.7 89 85.4
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 1.2e-31 141.7 93 80.6
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 1.5e-31 141.4 82 89.0
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 9.9e-31 138.7 124 66.9
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 1.7e-30 137.9 82 86.6
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 1.4e-29 134.8 399 33.1
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 6.0e-28 129.4 161 45.3
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 3.9e-27 126.7 65 95.4
BolSC28t60342H Brassica oleracea HOM05D010562 ORTHO05D016078 8.7e-27 125.6 65 96.9
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 1.6e-25 121.3 130 56.2
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 3.5e-20 103.6 281 36.7
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 7.9e-20 102.4 55 92.7
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 8.7e-19 99.0 129 39.5
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 3.3e-18 97.1 55 90.9
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 2.8e-17 94.0 48 95.8
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 3.1e-16 90.5 133 46.6
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 3.8e-14 83.6 71 69.0
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.5e-13 80.9 51 78.4
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 1.0e-11 75.5 100 40.0
Nitab4.5_0008535g0070 Nicotiana tabacum HOM05D012137 ORTHO05D013232 5.1e-11 73.2 38 94.7
EL10Ac5g11442 Beta vulgaris HOM05D010562 ORTHO05D013232 6.7e-11 72.8 35 100.0
TPR.G1744 Trifolium pratense HOM05D010562 ORTHO05D013232 1.1e-10 72.0 35 97.1
arahy.Tifrunner.gnm1.ann1.P7MYAW Arachis hypogaea HOM05D003666 ORTHO05D004770 9.7e-10 68.9 71 56.3
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 1.6e-09 68.2 139 33.1
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.6e-09 68.2 139 33.1
Medtr0082s0050 Medicago truncatula HOM05D012137 ORTHO05D013232 2.2e-09 67.8 32 100.0
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 2.2e-09 67.8 139 32.4
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 3.7e-09 67.0 139 32.4
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 3.7e-09 67.0 142 31.7
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 3.7e-09 67.0 142 31.7
Sopen05g012600 Solanum pennellii HOM05D012137 ORTHO05D011846 4.8e-09 66.6 33 97.0
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 6.3e-09 66.2 139 31.7
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 8.2e-09 65.9 139 32.4
DCAR_006817 Daucus carota HOM05D067084 ORTHO05D031111 1.4e-08 65.1 49 75.5
Nitab4.5_0007309g0040 Nicotiana tabacum HOM05D012137 ORTHO05D013232 1.8e-08 64.7 38 81.6
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.8e-08 64.7 50 68.0
BNapus_Darmor_BZH_scaffold_234p00260 Brassica napus HOM05D010562 ORTHO05D016078 2.4e-08 64.3 45 73.3
BraSC48t46267Z Brassica rapa HOM05D010562 ORTHO05D016078 2.4e-08 64.3 45 73.3
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-08 63.9 139 32.4
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 4.1e-08 63.5 139 30.9
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 4.1e-08 63.5 139 30.9
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 5.3e-08 63.2 139 30.9
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 5.3e-08 63.2 63 47.6
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 6.9e-08 62.8 139 29.5
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 6.9e-08 62.8 158 28.5
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 6.9e-08 62.8 158 28.5
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 6.9e-08 62.8 55 61.8
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 9.0e-08 62.4 142 29.6
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 9.0e-08 62.4 142 29.6
AL3G44300 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 2.0e-07 61.2 46 67.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-07 61.2 132 30.3
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-07 60.8 145 29.7
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 5.9e-07 59.7 158 29.1
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 7.7e-07 59.3 158 28.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-06 58.9 68 54.4
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.0e-06 58.9 35 74.3
Nitab4.5_0000172g0140 Nicotiana tabacum HOM05D012137 ORTHO05D013232 1.3e-06 58.5 37 81.1
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 1.7e-06 58.2 139 29.5
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 2.2e-06 57.8 155 27.7
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 2.9e-06 57.4 157 27.4
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 2.9e-06 57.4 136 27.9
BraSC177t45768Z Brassica rapa HOM05D010562 ORTHO05D013232 6.5e-06 56.2 26 100.0
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 6.5e-06 56.2 98 37.8
Lsat_1_v5_gn_1_14200 Lactuca sativa HOM05D001200 ORTHO05D002731 8.5e-06 55.8 64 39.1


User provided reference genes

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