Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 3.2e-209 731.9 474 100.0
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 1.2e-139 500.7 479 70.6
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.1e-137 494.2 471 71.1
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.9e-137 493.4 476 70.4
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.6e-136 490.3 475 71.2
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.3e-135 486.5 471 71.3
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 5.2e-135 485.3 475 70.7
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 5.7e-134 481.9 477 70.9
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 3.7e-133 479.2 473 73.6
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 4.9e-133 478.8 477 70.6
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.8e-132 476.9 477 70.2
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 8.9e-119 431.4 467 66.0
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 9.6e-97 358.2 468 57.7
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 6.2e-96 355.5 430 53.5
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 1.7e-69 267.7 467 47.1
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 7.2e-68 262.3 473 49.0
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.6e-67 261.2 474 50.2
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 1.5e-62 244.6 467 49.7
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 1.5e-62 244.6 467 49.7
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 1.5e-62 244.6 467 49.7
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 7.2e-60 235.7 444 50.7
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 4.7e-59 233.0 397 39.3
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.1e-57 228.4 467 48.2
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 3.3e-57 226.9 469 46.5
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 9.7e-57 225.3 463 48.6
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.8e-56 223.0 468 48.1
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 8.2e-56 222.2 467 48.8
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.4e-55 221.5 474 48.5
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.4e-55 221.5 468 47.6
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.8e-55 221.1 463 48.2
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.5e-54 218.0 512 41.8
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.5e-54 218.0 477 47.4
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 2.0e-54 217.6 447 48.1
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.0e-54 217.6 448 45.5
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.6e-54 217.2 476 48.7
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 5.9e-54 216.1 446 49.1
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 5.9e-54 216.1 443 47.4
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.3e-53 214.9 476 48.3
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.9e-53 213.8 479 46.6
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.2e-52 210.3 463 47.7
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 3.2e-52 210.3 442 48.9
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 9.4e-52 208.8 468 48.9
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.2e-51 208.4 434 50.7
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.2e-51 208.4 463 47.3
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 2.7e-51 207.2 423 41.1
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 4.7e-51 206.5 430 47.7
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 6.1e-51 206.1 449 47.9
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 8.0e-51 205.7 454 47.8
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 2.3e-50 204.1 468 45.7
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 3.9e-50 203.4 461 45.6
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 6.7e-50 202.6 447 43.6
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 6.7e-50 202.6 465 45.6
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 1.1e-49 201.8 473 45.9
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.0e-49 201.1 438 46.6
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 2.6e-49 200.7 457 42.0
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.6e-49 200.7 475 44.4
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 7.4e-49 199.1 152 71.7
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 2.2e-48 197.6 442 48.2
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 8.2e-48 195.7 440 47.0
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 1.6e-46 191.4 464 42.5
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 1.6e-46 191.4 468 42.1
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.6e-46 191.4 440 46.1
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 3.5e-46 190.3 467 45.6
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 2.2e-45 187.6 479 44.1
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 3.6e-43 180.3 477 44.7
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 4.7e-43 179.9 392 47.4
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 4.7e-43 179.9 477 43.0
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 6.1e-43 179.5 480 43.8
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 1.0e-42 178.7 473 44.2
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 2.6e-41 174.1 466 44.8
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 7.5e-41 172.6 399 49.1
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 4.8e-40 169.9 447 40.5
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 6.3e-40 169.5 442 45.0
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 2.4e-39 167.5 442 45.2
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.3e-39 166.4 480 39.6
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 9.1e-39 165.6 479 39.5
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.3e-37 161.8 143 54.5
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 1.1e-36 158.7 434 45.4
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 1.5e-36 158.3 475 43.4
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 1.6e-35 154.8 378 48.1
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 2.3e-34 151.0 428 44.4
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 8.8e-34 149.1 158 44.9
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.2e-33 148.7 419 43.9
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 2.0e-33 147.9 372 49.7
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 7.5e-33 146.0 480 41.0
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 1.8e-31 141.4 461 42.5
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 3.1e-31 140.6 475 41.5
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 3.1e-31 140.6 158 45.6
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 7.0e-31 139.4 425 44.9
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.2e-30 138.7 471 40.6
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 7.7e-30 136.0 166 43.4
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.5e-28 129.8 137 49.6
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 9.5e-28 129.0 349 47.3
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 9.5e-28 129.0 460 42.0
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.2e-27 128.6 417 43.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 6.1e-27 126.3 353 49.0
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 6.1e-27 126.3 351 48.1
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 1.4e-26 125.2 447 40.0
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 4.4e-25 120.2 341 49.0
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 2.4e-23 114.4 143 43.4
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.1e-23 114.0 293 50.2
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 9.2e-23 112.5 505 34.5
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 9.2e-23 112.5 303 51.8
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.9e-22 109.8 135 45.2
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.9e-22 109.8 121 47.1
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 3.8e-21 107.1 138 39.9
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 8.6e-21 105.9 121 45.5
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.2e-19 102.1 351 47.9
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.6e-19 101.7 182 31.9
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 3.6e-19 100.5 131 39.7
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 8.9e-18 95.9 409 28.1
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.5e-17 95.1 120 46.7
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 2.6e-17 94.4 127 35.4
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 7.5e-17 92.8 114 46.5
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 2.9e-16 90.9 233 51.5
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 8.3e-16 89.4 373 41.8
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 3.0e-13 80.9 179 30.2
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.2e-11 75.5 105 35.2
LjContig00408g0001360 Lotus japonicus HOM05D000424 ORTHO05D000355 2.8e-11 74.3 158 29.1
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 1.8e-10 71.6 146 28.1
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 1.8e-10 71.6 146 28.1
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.1e-10 70.9 54 61.1
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 4.0e-10 70.5 87 42.5
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 5.8e-09 66.6 146 29.5
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 9.8e-09 65.9 146 28.8
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 2.9e-08 64.3 136 30.9
CANSAT78G0678 Cannabis sativa HOM05D000424 ORTHO05D000355 3.7e-08 63.9 148 25.7
Rhsim08G0086500 Rhododendron simsii HOM05D002007 ORTHO05D000355 3.7e-08 63.9 427 21.1
Migut.H00273 Erythranthe guttata HOM05D002007 ORTHO05D000355 4.9e-08 63.5 429 17.7
Dinv19018 Davidia involucrata HOM05D002007 ORTHO05D000355 6.4e-08 63.2 427 19.9
EL10Ac7g17845 Beta vulgaris HOM05D000424 ORTHO05D000355 8.3e-08 62.8 160 26.2
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.1e-07 62.4 146 28.1
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 1.4e-07 62.0 151 25.2
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 1.4e-07 62.0 128 28.1
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 2.4e-07 61.2 76 44.7
DCAR_010740 Daucus carota HOM05D002007 ORTHO05D000355 3.2e-07 60.8 430 21.2
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 4.1e-07 60.5 109 28.4
VMungo1215G0023 Vigna mungo HOM05D000424 ORTHO05D000355 5.4e-07 60.1 183 26.2
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 7.0e-07 59.7 148 27.0
Phvul.002G043300 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 7.0e-07 59.7 130 27.7
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 9.2e-07 59.3 172 26.2
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 9.2e-07 59.3 152 24.3
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 1.2e-06 58.9 141 27.0
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 1.2e-06 58.9 141 27.0
Actinidia40130 Actinidia chinensis HOM05D000424 ORTHO05D000355 2.1e-06 58.2 153 23.5
Ah.10g038020 Amaranthus hybridus HOM05D002007 ORTHO05D000355 2.1e-06 58.2 423 19.4
CDE03G0080 Ceratophyllum demersum HOM05D002007 ORTHO05D000355 2.1e-06 58.2 427 19.2
Glyma.01G235800 Glycine max HOM05D000424 ORTHO05D000355 2.1e-06 58.2 128 26.6
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 2.1e-06 58.2 196 23.0
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 2.1e-06 58.2 175 27.4
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 2.7e-06 57.8 147 25.9
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 3.5e-06 57.4 186 25.8
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 3.5e-06 57.4 144 25.0
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 3.5e-06 57.4 148 26.4
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 3.5e-06 57.4 144 26.4
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 4.6e-06 57.0 131 28.2
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 7.8e-06 56.2 146 27.4
MD13G1197300 Malus domestica HOM05D000424 ORTHO05D000355 7.8e-06 56.2 175 26.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 7.8e-06 56.2 61 49.2


User provided reference genes

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