Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 6.4e-100 367.5 192 100.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-92 341.7 195 93.8
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 3.8e-92 341.7 195 93.8
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 5.4e-91 337.8 192 94.3
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.6e-90 336.3 196 92.3
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 3.9e-89 331.6 197 91.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 5.1e-89 331.3 192 92.2
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 3.3e-88 328.6 188 94.1
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 5.6e-88 327.8 194 91.8
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 4.8e-87 324.7 198 90.9
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.4e-86 323.2 192 87.5
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 8.7e-81 303.9 192 85.4
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.9e-80 302.8 192 84.9
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 2.5e-80 302.4 192 84.4
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.6e-80 301.2 192 82.8
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 1.6e-79 299.7 188 83.0
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 2.1e-79 299.3 192 83.3
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 2.1e-79 299.3 192 83.3
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 6.2e-79 297.7 192 82.8
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 1.8e-78 296.2 187 89.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.9e-78 294.3 192 81.8
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 4.5e-77 291.6 192 81.2
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 4.9e-76 288.1 188 81.9
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 8.4e-76 287.3 229 70.7
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 5.5e-75 284.6 193 80.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 9.3e-75 283.9 182 82.4
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.6e-72 274.6 192 78.1
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 1.4e-70 270.0 189 79.4
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 6.0e-66 254.6 143 95.8
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.1e-64 250.4 192 71.9
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-64 249.6 165 81.2
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-64 249.6 165 81.2
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-64 249.6 165 81.2
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-64 249.6 165 81.2
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-64 249.6 165 81.2
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.9e-61 238.0 192 69.3
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-59 233.8 141 89.4
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.2e-58 230.3 139 87.8
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.2e-58 230.3 139 87.8
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 2.7e-58 229.2 133 92.5
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 2.2e-55 219.5 157 75.8
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 2.8e-55 219.2 132 88.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.0e-53 213.0 132 84.8
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.3e-52 210.3 142 80.3
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.4e-51 206.8 145 79.3
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-51 206.8 139 79.1
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-51 206.8 139 79.1
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-51 206.8 139 79.1
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 2.1e-50 203.0 154 73.4
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 7.9e-50 201.1 144 77.8
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.1e-49 198.4 129 81.4
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 6.7e-49 198.0 128 83.6
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 3.3e-48 195.7 121 86.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 2.2e-47 193.0 132 78.8
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.8e-47 191.8 131 79.4
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.5e-45 186.8 177 63.8
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.9e-44 182.6 121 79.3
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 3.8e-44 182.2 129 76.7
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.9e-43 179.9 124 76.6
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.9e-43 179.9 130 71.5
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 3.2e-43 179.1 118 78.8
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-42 177.2 193 58.0
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 6.1e-42 174.9 118 78.8
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.0e-42 174.5 115 80.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-41 173.7 95 95.8
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 5.7e-40 168.3 126 72.2
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-39 167.2 91 95.6
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.2e-39 166.4 105 83.8
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-39 164.9 116 77.6
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-39 164.9 116 77.6
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-39 164.9 116 77.6
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.1e-38 164.1 115 79.1
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-38 163.7 139 67.6
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 1.8e-38 163.3 94 91.5
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.0e-38 161.4 113 77.0
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-36 157.5 107 78.5
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-36 157.1 98 82.7
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 6.5e-36 154.8 105 79.0
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.5e-35 153.7 143 63.6
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.5e-35 152.9 200 51.0
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 3.2e-35 152.5 90 91.1
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 3.2e-35 152.5 129 66.7
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 7.2e-35 151.4 145 62.8
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.6e-34 150.2 116 75.0
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.7e-34 149.4 95 84.2
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.7e-34 149.4 95 84.2
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.4e-33 147.1 94 81.9
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.2e-33 145.2 111 72.1
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.5e-32 143.7 90 81.1
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.5e-32 143.7 164 57.3
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.3e-32 142.5 116 70.7
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 9.7e-32 141.0 132 60.6
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 9.7e-32 141.0 132 60.6
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.1e-30 137.5 140 57.1
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-24 117.1 74 87.8
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 5.7e-24 115.2 76 82.9
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 1.3e-23 114.0 190 37.9
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 3.7e-23 112.5 69 84.1
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 1.4e-22 110.5 114 60.5
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 1.8e-22 110.2 60 96.7
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-22 110.2 77 77.9
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.8e-22 110.2 72 79.2
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.1e-22 109.0 66 84.8
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.4e-22 108.6 76 77.6
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-21 106.7 68 83.8
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.9e-21 105.1 68 80.9
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 1.3e-20 104.0 65 81.5
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 2.3e-20 103.2 73 75.3
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 6.6e-20 101.7 54 96.3
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 5.5e-19 98.6 57 84.2
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.1e-18 96.7 53 88.7
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.1e-18 96.7 68 76.5
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.8e-18 96.3 76 65.8
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.0e-18 94.7 68 73.5
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.0e-17 94.4 60 78.3
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 8.9e-17 91.3 53 83.0
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-16 90.9 53 83.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 3.4e-16 89.4 71 71.8
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 5.7e-16 88.6 57 84.2
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.5e-16 88.2 53 83.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 7.5e-16 88.2 94 57.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.7e-15 85.9 53 83.0
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 3.7e-15 85.9 56 76.8
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 1.8e-14 83.6 96 56.2
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 4.1e-14 82.4 48 83.3
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 2.0e-13 80.1 75 62.7
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.7e-12 77.0 57 71.9
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.9e-11 73.6 61 65.6
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 3.3e-11 72.8 50 72.0
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 5.6e-11 72.0 55 67.3
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 9.5e-11 71.2 68 57.4
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.1e-10 70.1 61 63.9
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.0e-09 67.8 41 80.5
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.8e-09 67.0 37 86.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.8e-09 67.0 37 86.5
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 3.4e-08 62.8 41 78.0
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 4.4e-08 62.4 41 82.9
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 1.1e-06 57.8 80 48.8


User provided reference genes

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