Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.0e-96 356.7 170 100.0
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.0e-96 356.7 170 100.0
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.0e-96 356.7 170 100.0
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.0e-96 356.7 170 100.0
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.0e-96 356.7 170 100.0
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 2.2e-96 355.5 170 99.4
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 2.2e-96 355.5 170 99.4
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 5.0e-96 354.4 170 99.4
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.4e-95 352.8 170 98.8
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.5e-95 350.9 170 98.8
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 2.1e-94 349.0 170 98.2
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 2.1e-94 349.0 170 98.2
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 3.6e-94 348.2 170 97.6
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.6e-94 348.2 170 97.6
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 4.6e-94 347.8 170 98.2
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 4.6e-94 347.8 170 98.2
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 4.6e-94 347.8 170 98.2
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 6.1e-94 347.4 167 98.8
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 6.1e-94 347.4 170 97.6
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.0e-93 346.7 169 98.2
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.4e-93 346.3 170 97.1
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 1.4e-93 346.3 169 97.6
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 3.0e-93 345.1 170 97.6
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 3.0e-93 345.1 170 97.6
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 5.1e-93 344.4 170 96.5
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.1e-93 344.4 170 96.5
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 6.7e-93 344.0 170 96.5
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.1e-92 343.2 170 97.1
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.1e-92 343.2 170 97.1
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.0e-92 342.4 170 97.1
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.0e-92 342.4 170 97.1
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 2.6e-92 342.0 170 95.9
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 5.7e-92 340.9 170 96.5
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 4.8e-91 337.8 170 95.9
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 4.8e-91 337.8 170 95.9
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 4.8e-91 337.8 170 95.9
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 4.8e-91 337.8 170 95.9
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 6.3e-91 337.4 168 96.4
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 6.3e-91 337.4 168 96.4
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 8.2e-91 337.0 166 97.0
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 4.1e-90 334.7 168 95.8
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 9.1e-90 333.6 170 94.7
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-89 332.8 170 93.5
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.4e-89 331.6 167 94.0
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 5.9e-89 330.9 169 95.3
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.0e-88 330.1 167 93.4
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.9e-88 328.6 164 95.1
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.9e-88 328.6 164 95.1
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-87 325.9 170 92.4
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 5.5e-87 324.3 170 92.4
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 5.5e-87 324.3 163 94.5
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 7.2e-87 323.9 170 92.4
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 9.4e-87 323.6 167 91.6
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 2.1e-86 322.4 170 91.8
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 3.6e-86 321.6 166 92.8
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.7e-86 321.2 167 92.2
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 3.0e-85 318.5 168 91.7
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.7e-83 312.8 158 94.3
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-83 312.8 166 89.8
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-81 304.7 170 85.9
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-79 299.7 169 87.0
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-79 299.3 164 88.4
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.2e-78 296.6 144 97.9
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.7e-78 294.7 170 84.7
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 3.0e-77 292.0 170 83.5
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.5e-76 289.7 153 92.2
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.3e-76 288.5 141 97.9
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.3e-76 288.5 141 97.9
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 4.4e-76 288.1 163 85.3
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 9.7e-76 287.0 167 85.6
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 9.7e-76 287.0 144 95.8
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-72 276.9 147 90.5
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-72 276.9 138 96.4
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.2e-72 275.8 135 97.0
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 8.5e-72 273.9 170 81.8
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-70 270.0 135 94.8
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-69 266.9 144 89.6
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-68 263.5 138 92.0
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-68 263.5 138 92.0
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-68 263.5 143 88.8
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-68 262.3 141 88.7
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-67 260.0 132 93.2
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-66 256.9 131 92.4
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-66 255.0 148 83.8
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 2.0e-65 252.7 172 77.9
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-65 252.7 167 73.7
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-62 243.0 136 87.5
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.7e-62 242.3 130 90.8
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-59 231.1 138 84.8
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-57 226.9 127 86.6
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 5.9e-57 224.6 133 84.2
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-56 223.8 134 83.6
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-56 222.2 114 92.1
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 3.6e-54 215.3 114 91.2
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.4e-53 213.4 99 100.0
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 1.8e-53 213.0 132 81.1
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 4.0e-53 211.8 109 92.7
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 8.9e-53 210.7 100 98.0
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 5.7e-52 208.0 132 80.3
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 4.9e-51 204.9 97 97.9
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 6.4e-51 204.5 96 99.0
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 6.4e-51 204.5 99 97.0
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-49 199.9 138 73.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-49 199.5 115 86.1
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.0e-49 199.5 101 93.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.7e-48 196.4 153 60.1
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 6.6e-48 194.5 115 84.3
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-47 191.0 100 90.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.6e-46 189.9 146 59.6
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 8.9e-45 184.1 99 87.9
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-44 182.2 94 90.4
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 7.5e-44 181.0 101 86.1
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 2.2e-43 179.5 111 82.9
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.4e-42 176.8 127 71.7
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 2.7e-41 172.6 79 98.7
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.3e-40 170.2 164 58.5
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 1.1e-39 167.2 89 89.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 9.5e-39 164.1 129 67.4
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-38 162.9 132 64.4
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-38 162.2 87 86.2
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-38 162.2 87 86.2
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-37 159.1 170 52.4
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.9e-37 157.5 91 83.5
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 4.4e-36 155.2 74 97.3
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.4e-36 155.2 74 97.3
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 2.9e-35 152.5 74 95.9
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 2.9e-35 152.5 74 95.9
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 2.9e-35 152.5 74 95.9
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 2.9e-35 152.5 74 95.9
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 3.7e-35 152.1 74 93.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 8.3e-35 151.0 81 86.4
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 1.6e-33 146.7 71 94.4
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 4.6e-33 145.2 74 90.5
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-33 144.4 75 92.0
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-32 144.1 74 90.5
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-32 142.9 74 90.5
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.0e-32 142.5 72 91.7
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-32 142.5 74 89.2
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-32 142.1 74 89.2
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.1e-32 141.7 144 56.2
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 6.6e-32 141.4 153 48.4
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-31 139.4 72 90.3
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-31 138.3 70 91.4
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-31 138.3 74 87.8
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 59.3
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 59.3
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-30 136.3 72 87.5
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.6e-30 135.6 74 85.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-29 134.0 74 86.5
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 132.9 74 86.5
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.3e-29 132.9 122 59.0
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 6.8e-29 131.3 71 87.3
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.6e-28 129.4 92 70.7
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-28 128.6 74 83.8
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 8.4e-27 124.4 64 92.2
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.3e-24 116.3 69 82.6
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 6.6e-24 114.8 64 84.4
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 7.3e-23 111.3 59 93.2
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 3.6e-22 109.0 61 90.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 9.9e-20 100.9 47 95.7
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.9e-18 96.7 49 89.8
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-18 95.9 69 69.6
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 4.6e-17 92.0 58 77.6
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-17 91.3 111 49.5
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.7e-16 87.8 44 93.2
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 6.9e-13 78.2 36 100.0
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.5e-12 77.0 45 77.8
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-12 76.6 50 74.0
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-10 70.9 100 47.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 2.1e-09 66.6 35 85.7
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 3.5e-09 65.9 29 100.0
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-08 63.5 69 49.3
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 3.0e-08 62.8 30 93.3
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 3.9e-08 62.4 30 90.0
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-08 61.2 33 87.9
SHI42054 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-06 55.8 27 92.6


User provided reference genes

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