Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.7e-50 201.8 111 100.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.8e-38 162.5 111 83.8
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 9.9e-37 156.8 111 81.1
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.7e-36 156.0 111 79.3
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 6.4e-36 154.1 111 79.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 6.4e-36 154.1 111 79.3
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-34 149.8 110 77.3
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-34 149.8 110 77.3
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.6e-34 149.4 100 84.0
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 6.7e-33 144.1 111 76.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 6.7e-33 144.1 111 76.6
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.9e-32 142.5 101 82.2
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-31 139.8 111 74.8
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.1e-31 139.0 101 79.2
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 6.2e-31 137.5 95 81.1
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 4.0e-30 134.8 100 77.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 5.3e-30 134.4 111 71.2
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.5e-29 132.9 97 79.4
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.0e-29 132.5 99 76.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.6e-29 132.1 111 71.2
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.3e-28 129.8 111 64.9
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 6.4e-28 127.5 111 66.7
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.4e-27 126.3 96 76.0
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.1e-26 122.5 111 64.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.6e-26 121.3 111 64.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.0e-25 118.6 111 62.2
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 6.7e-25 117.5 100 70.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.1e-24 116.7 112 64.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.9e-24 115.9 111 65.8
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.9e-24 115.9 111 61.3
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.3e-24 115.2 111 60.4
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 5.6e-24 114.4 113 60.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 9.6e-24 113.6 111 59.5
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 9.6e-24 113.6 102 65.7
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.1e-23 112.5 110 62.7
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 6.2e-23 110.9 111 60.4
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.2e-23 110.5 111 64.9
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.2e-23 110.5 111 64.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.8e-22 109.4 104 63.5
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 2.4e-22 109.0 102 62.7
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.3e-22 107.8 111 55.9
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 6.9e-22 107.5 111 64.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 9.0e-22 107.1 111 61.3
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.2e-21 106.7 112 60.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.6e-21 105.5 110 57.3
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.4e-21 105.1 112 58.9
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.5e-21 104.8 111 60.4
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.8e-21 104.4 110 59.1
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 5.8e-21 104.4 111 56.8
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.6e-21 104.0 101 63.4
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 7.6e-21 104.0 113 60.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.0e-20 103.6 111 54.1
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.0e-20 103.6 102 66.7
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 1.0e-20 103.6 100 61.0
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-20 102.8 111 59.5
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.7e-20 102.8 111 57.7
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.2e-20 102.4 101 61.4
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.2e-20 102.4 111 59.5
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.9e-20 102.1 100 66.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 4.9e-20 101.3 100 66.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.1e-19 100.1 100 64.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 3.2e-19 98.6 111 54.1
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 5.5e-19 97.8 111 55.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.2e-18 96.7 100 60.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 1.2e-18 96.7 111 52.3
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 2.7e-18 95.5 101 56.4
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.7e-18 95.5 101 60.4
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 6.0e-18 94.4 102 58.8
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 7.9e-18 94.0 110 56.4
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 7.9e-18 94.0 100 62.0
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 1.0e-17 93.6 92 59.8
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.3e-17 93.2 111 52.3
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 2.3e-17 92.4 100 59.0
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 3.9e-17 91.7 100 56.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 5.1e-17 91.3 100 62.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.5e-16 89.7 101 57.4
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.9e-16 89.4 103 56.3
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.5e-16 89.0 62 74.2
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 3.3e-16 88.6 102 56.9
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 4.3e-16 88.2 101 55.4
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 9.7e-16 87.0 112 53.6
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.8e-15 85.5 101 53.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.8e-15 85.5 100 55.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 4.8e-15 84.7 100 54.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 3.1e-14 82.0 109 53.2
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 6.9e-14 80.9 111 53.2
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.2e-13 80.1 100 52.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 1.5e-13 79.7 101 52.5
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 3.4e-13 78.6 101 51.5
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 7.6e-13 77.4 98 52.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.0e-12 77.0 100 51.0
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.0e-12 77.0 111 53.2
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.7e-12 76.3 102 51.0
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.9e-12 75.5 102 52.9
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 5.0e-12 74.7 111 49.5
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.0e-12 74.7 93 52.7
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.0e-12 74.7 93 52.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 6.5e-12 74.3 100 51.0
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.9e-11 72.8 105 47.6
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.9e-11 72.8 105 46.7
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.2e-11 72.0 92 52.2
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 4.2e-11 71.6 101 48.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 7.2e-11 70.9 105 45.7
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.2e-10 70.1 111 47.7
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 2.7e-10 68.9 51 70.6
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 4.6e-10 68.2 93 47.3
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 4.6e-10 68.2 55 76.4
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.1e-10 67.8 111 46.8
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.4e-09 66.6 46 71.7
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.4e-09 66.6 51 66.7
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.8e-09 66.2 110 44.5
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.3e-09 65.9 93 50.5
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.0e-09 65.5 105 46.7
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 3.9e-09 65.1 99 48.5
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 6.7e-09 64.3 54 63.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 6.7e-09 64.3 93 50.5
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 6.7e-09 64.3 93 47.3
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 6.7e-09 64.3 93 45.2
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 6.7e-09 64.3 93 45.2
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 8.8e-09 63.9 51 62.7
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 8.8e-09 63.9 69 55.1
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.1e-08 63.5 102 44.1
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.1e-08 63.5 96 45.8
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.1e-08 63.5 50 64.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.5e-08 63.2 93 47.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.5e-08 63.2 93 48.4
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.9e-08 62.8 105 40.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 2.5e-08 62.4 111 42.3
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 3.3e-08 62.0 93 49.5
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.3e-08 62.0 54 55.6
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.3e-08 62.0 47 66.0
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 4.3e-08 61.6 111 39.6
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 4.3e-08 61.6 111 41.4
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 4.3e-08 61.6 111 39.6
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 4.3e-08 61.6 111 45.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.7e-08 61.2 89 49.4
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 9.7e-08 60.5 62 54.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.3e-07 60.1 107 43.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-07 60.1 111 41.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.3e-07 60.1 94 45.7
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.3e-07 60.1 91 45.1
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.7e-07 59.7 53 56.6
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 1.7e-07 59.7 38 81.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.7e-07 59.7 48 62.5
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.7e-07 59.7 68 54.4
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.7e-07 59.7 105 41.9
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.7e-07 59.7 54 55.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.7e-07 59.7 81 51.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.2e-07 59.3 109 41.3
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 2.2e-07 59.3 111 41.4
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 2.2e-07 59.3 66 47.0
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.2e-07 59.3 105 41.0
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 2.8e-07 58.9 94 45.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.8e-07 58.9 68 54.4
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 2.8e-07 58.9 97 44.3
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.7e-07 58.5 93 45.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 3.7e-07 58.5 111 39.6
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 3.7e-07 58.5 67 53.7
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.7e-07 58.5 103 42.7
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 4.8e-07 58.2 111 39.6
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.8e-07 58.2 105 41.9
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 6.3e-07 57.8 99 42.4
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 6.3e-07 57.8 99 43.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 8.2e-07 57.4 94 47.9
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 8.2e-07 57.4 99 42.4
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.1e-06 57.0 88 40.9
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 1.1e-06 57.0 102 43.1
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.1e-06 57.0 88 42.0
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 1.1e-06 57.0 111 49.5
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.4e-06 56.6 111 38.7
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.4e-06 56.6 111 37.8
HPP92_025465 Vanilla planifolia HOM05D006762 ORTHO05D003505 1.4e-06 56.6 107 47.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.8e-06 56.2 105 40.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 1.8e-06 56.2 77 48.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.8e-06 56.2 93 46.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.8e-06 56.2 79 51.9
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.4e-06 55.8 111 37.8
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.4e-06 55.8 111 42.3
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.4e-06 55.8 57 56.1
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 4.1e-06 55.1 111 37.8
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.1e-06 55.1 97 41.2
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.3e-06 54.7 97 41.2
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.3e-06 54.7 93 44.1
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.3e-06 54.7 93 44.1
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 6.9e-06 54.3 82 47.6
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 9.1e-06 53.9 95 45.3


User provided reference genes

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