Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.5e-59 230.3 134 100.0
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.9e-42 176.0 110 94.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.3e-40 169.1 85 100.0
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 9.2e-37 157.1 124 79.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.7e-36 155.6 110 80.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.9e-36 154.5 110 82.7
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.7e-35 152.9 110 80.9
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.7e-35 152.9 110 80.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.9e-35 152.1 110 80.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.0e-35 151.4 102 87.3
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.0e-35 151.4 102 87.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 5.0e-35 151.4 102 87.3
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.0e-35 151.4 102 87.3
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-34 150.2 108 83.3
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-34 150.2 108 83.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-34 150.2 102 89.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-34 150.2 102 87.3
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.1e-34 150.2 102 87.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.1e-34 150.2 102 87.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.9e-34 149.4 110 81.8
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.3e-34 148.7 102 85.3
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.0e-32 141.7 108 76.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.5e-31 137.5 108 75.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.7e-30 136.3 111 65.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.2e-30 136.0 142 64.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-29 133.7 108 75.9
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.1e-29 133.7 108 67.6
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.9e-29 132.9 105 78.1
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.9e-29 132.9 103 76.7
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.4e-29 132.5 109 73.4
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.2e-29 132.1 93 76.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.2e-29 132.1 107 72.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.2e-29 132.1 111 72.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.2e-29 132.1 101 77.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.1e-29 131.7 112 72.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.1e-29 131.7 103 68.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 5.4e-29 131.3 109 66.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 5.4e-29 131.3 108 69.4
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.4e-29 131.3 108 69.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.4e-29 131.3 112 71.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 7.0e-29 131.0 122 60.7
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.0e-29 131.0 109 70.6
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 9.2e-29 130.6 110 72.7
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 9.2e-29 130.6 112 67.0
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.2e-28 130.2 108 63.9
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.2e-28 130.2 112 71.4
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.2e-28 130.2 109 71.6
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.2e-28 130.2 109 74.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.6e-28 129.8 109 63.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-28 129.8 105 76.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.6e-28 129.8 105 76.2
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.6e-28 129.8 108 63.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.0e-28 129.4 107 64.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.7e-28 129.0 109 71.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.5e-28 128.6 110 68.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.5e-28 128.6 110 71.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.5e-28 128.6 109 74.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 4.6e-28 128.3 109 65.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 6.0e-28 127.9 112 72.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 7.8e-28 127.5 102 74.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 7.8e-28 127.5 108 74.1
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 7.8e-28 127.5 107 66.4
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-27 126.7 111 71.2
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.3e-27 126.7 105 67.6
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.3e-27 125.9 101 78.2
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 2.3e-27 125.9 108 73.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 3.9e-27 125.2 110 73.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.9e-27 125.2 109 68.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.0e-27 124.8 111 75.7
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.0e-27 124.8 109 63.3
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 6.6e-27 124.4 107 72.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 8.6e-27 124.0 110 61.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 8.6e-27 124.0 109 69.7
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 8.6e-27 124.0 109 71.6
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 8.6e-27 124.0 109 68.8
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-26 123.2 110 64.5
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.5e-26 123.2 109 69.7
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.9e-26 122.9 103 70.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.5e-26 122.5 113 72.6
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.5e-26 122.5 107 66.4
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.3e-26 122.1 112 67.9
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.3e-26 122.1 120 56.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 5.6e-26 121.3 110 69.1
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 5.6e-26 121.3 109 67.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.3e-26 120.9 109 62.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 7.3e-26 120.9 108 63.9
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.2e-25 120.2 105 69.5
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 6.2e-25 117.9 104 69.2
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.1e-25 117.5 104 69.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 8.1e-25 117.5 104 69.2
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.1e-24 117.1 110 59.1
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.8e-24 116.3 103 70.9
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.8e-24 116.3 102 69.6
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.3e-24 115.9 108 61.1
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 4.0e-24 115.2 113 69.9
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.0e-24 115.2 110 70.9
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 6.8e-24 114.4 103 68.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 6.8e-24 114.4 110 70.9
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-23 113.6 103 70.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-23 113.6 103 70.9
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.2e-23 113.6 102 71.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.2e-23 113.6 110 70.9
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.5e-23 113.2 64 79.7
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.0e-23 112.8 105 65.7
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.6e-23 112.5 101 74.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 4.4e-23 111.7 108 62.0
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.8e-23 111.3 135 57.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.8e-23 111.3 117 55.6
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 7.5e-23 110.9 100 56.0
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.5e-23 110.9 109 62.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.8e-23 110.5 103 63.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 9.8e-23 110.5 68 77.9
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 9.8e-23 110.5 65 81.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.9e-22 109.0 91 62.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 6.4e-22 107.8 107 62.6
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 6.4e-22 107.8 102 67.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.4e-21 105.9 91 61.5
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.2e-21 105.5 145 46.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.2e-21 105.5 105 62.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.1e-21 105.1 64 75.0
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 5.4e-21 104.8 60 81.7
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.2e-20 103.6 103 67.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-20 103.2 112 60.7
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 7.8e-20 100.9 108 60.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.0e-19 100.5 103 61.2
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.3e-19 100.1 58 75.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.2e-17 93.6 103 57.3
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-16 90.5 99 51.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.4e-16 90.1 103 62.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.1e-13 77.8 188 41.0
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-11 73.2 195 39.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.6e-09 65.5 78 55.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.7e-09 65.1 89 48.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.9e-06 55.1 35 62.9


User provided reference genes

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