Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.7e-88 329.3 172 100.0
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.9e-79 299.3 158 98.7
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 2.5e-79 298.9 158 98.7
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.3e-79 298.1 158 98.1
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.1e-77 293.5 158 96.8
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.5e-73 278.5 158 92.4
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.5e-73 278.5 158 92.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 7.8e-73 277.3 146 99.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.7e-72 276.2 155 94.2
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 3.0e-72 275.4 158 93.0
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 3.0e-72 275.4 158 93.0
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 3.9e-72 275.0 158 91.8
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-71 273.5 155 93.5
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-71 273.5 155 93.5
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-71 273.5 155 93.5
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-71 273.5 155 93.5
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.5e-71 273.1 155 93.5
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.5e-71 273.1 158 90.5
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 5.6e-71 271.2 155 92.9
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 9.5e-71 270.4 155 93.5
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 9.5e-71 270.4 155 93.5
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 2.1e-70 269.2 158 90.5
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 2.8e-70 268.9 155 92.9
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 3.6e-70 268.5 158 91.1
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 3.6e-70 268.5 158 91.1
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 4.7e-70 268.1 155 92.9
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 8.1e-70 267.3 155 92.9
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 5.2e-69 264.6 152 91.4
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 8.9e-69 263.8 155 91.6
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 8.9e-69 263.8 151 92.1
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 8.9e-69 263.8 151 92.1
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.2e-68 263.5 155 91.0
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.2e-68 263.5 155 91.0
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 3.4e-68 261.9 151 92.1
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 3.4e-68 261.9 151 92.1
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 3.4e-68 261.9 155 89.7
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.6e-68 260.8 155 89.7
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 9.9e-68 260.4 155 90.3
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 9.9e-68 260.4 155 90.3
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.2e-67 259.2 155 89.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 2.2e-67 259.2 158 86.1
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.9e-67 258.8 152 90.8
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.8e-67 258.5 150 91.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.8e-67 258.5 150 91.3
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 6.4e-67 257.7 148 91.9
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.4e-66 256.5 155 88.4
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.5e-65 251.9 158 86.7
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.5e-65 251.9 158 86.7
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 6.0e-65 251.1 149 87.9
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 2.8e-62 242.3 155 82.6
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.4e-61 240.0 132 93.2
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.8e-61 239.6 147 86.4
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.4e-61 239.2 142 88.7
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 3.4e-60 235.3 146 87.0
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 8.4e-59 230.7 134 89.6
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 2.4e-58 229.2 158 80.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 2.4e-58 229.2 158 80.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 2.4e-58 229.2 158 80.4
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.3e-56 223.4 158 77.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 7.3e-55 217.6 122 93.4
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 7.3e-55 217.6 122 93.4
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 8.4e-51 204.1 105 98.1
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 8.4e-51 204.1 105 98.1
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.4e-51 204.1 118 90.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.1e-50 203.8 114 91.2
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.4e-50 203.4 118 90.7
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.2e-50 202.2 112 92.0
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.1e-49 199.5 118 89.8
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.9e-47 193.0 109 89.9
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.8e-45 186.4 109 85.3
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 7.6e-44 181.0 111 84.7
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 9.9e-44 180.6 115 85.2
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.2e-43 179.5 97 93.8
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 2.9e-43 179.1 99 93.9
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.1e-42 177.2 109 86.2
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.4e-42 176.0 158 67.1
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 3.0e-40 169.1 117 76.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 3.9e-40 168.7 102 84.3
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-38 163.3 86 98.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 4.8e-38 161.8 97 90.7
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 6.2e-38 161.4 89 92.1
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.9e-35 151.8 92 83.7
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.2e-34 148.7 88 90.9
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 7.1e-34 147.9 82 92.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.1e-33 146.4 84 91.7
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 1.2e-28 130.6 75 93.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 9.3e-26 120.9 110 62.7
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 6.7e-24 114.8 74 81.1
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 6.7e-24 114.8 74 81.1
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 3.7e-22 109.0 64 89.1
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.1e-21 105.9 68 86.8
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.1e-21 104.4 65 80.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.6e-20 102.8 68 80.9
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.6e-20 102.8 97 69.1
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 3.3e-15 85.9 47 91.5
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 2.8e-14 82.8 46 89.1
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 4.8e-14 82.0 47 89.4
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 6.3e-14 81.6 47 89.4
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.1e-13 79.3 50 78.0
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 2.0e-12 76.6 43 95.3
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-11 73.2 44 84.1
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.9e-10 70.1 45 77.8
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 2.1e-09 66.6 59 67.8
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.1e-09 65.1 39 79.5
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.0e-08 64.3 50 64.0
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 7.4e-07 58.2 38 84.2


User provided reference genes

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