Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 4.5e-152 541.2 270 100.0
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 8.2e-77 291.2 282 56.4
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 8.2e-77 291.2 282 56.4
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-76 290.8 282 56.0
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-76 290.8 282 56.0
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.6e-59 233.0 249 53.0
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.5e-59 232.3 249 52.2
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 2.2e-58 229.9 273 49.1
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 2.2e-58 229.9 273 49.1
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.6e-56 223.8 244 52.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 6.1e-56 221.9 279 42.7
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.8e-55 220.3 273 48.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.5e-54 217.2 283 42.4
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.5e-54 217.2 281 42.0
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 5.7e-54 215.3 288 44.1
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 7.0e-52 208.4 278 42.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.4e-46 189.1 264 41.3
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.5e-43 179.5 262 39.7
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 2.9e-42 176.4 245 40.0
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-41 173.7 262 39.3
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-40 171.0 245 39.2
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-39 167.2 258 38.4
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-39 167.2 258 38.4
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-39 167.2 258 38.4
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 6.8e-39 165.2 224 43.3
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 8.9e-39 164.9 270 35.9
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-38 164.5 245 38.8
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-38 164.1 210 41.4
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-37 161.0 240 38.3
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.7e-37 160.6 244 38.9
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.8e-36 157.1 263 36.5
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-36 156.4 262 37.0
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 9.2e-36 154.8 250 37.2
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-35 153.3 230 38.3
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 2.5e-33 146.7 254 36.6
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.9e-31 138.3 215 38.1
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 5.8e-30 135.6 196 38.3
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-27 127.5 176 38.6
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-27 126.7 138 46.4
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.7e-27 126.7 185 37.8
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 6.0e-27 125.6 116 52.6
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.0e-27 125.6 185 37.8
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.0e-27 125.6 185 37.8
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.0e-26 123.2 183 39.9
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.9e-26 122.9 130 46.9
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 3.9e-26 122.9 130 46.9
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 3.3e-25 119.8 218 36.7
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-24 115.9 183 38.3
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.1e-23 114.8 225 34.7
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.8e-23 114.0 227 33.0
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 2.3e-23 113.6 151 43.0
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.0e-23 112.8 211 33.2
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-23 112.5 120 45.8
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-22 111.3 193 36.3
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 9.8e-22 108.2 118 42.4
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 8.3e-21 105.1 259 30.1
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.4e-20 104.4 229 32.8
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-19 101.3 193 34.2
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.2e-19 101.3 241 30.7
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 2.1e-19 100.5 91 51.6
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.5e-19 99.8 90 50.0
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 7.8e-19 98.6 103 45.6
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-18 98.2 159 36.5
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-18 96.3 121 43.8
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-18 96.3 121 43.8
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-18 96.3 121 43.8
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-18 96.3 121 43.8
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 5.1e-18 95.9 89 57.3
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 5.1e-18 95.9 89 47.2
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 8.6e-18 95.1 107 46.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.1e-17 94.7 233 31.3
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.1e-17 94.7 109 45.9
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-17 94.0 197 37.1
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-17 94.0 197 37.1
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.5e-17 93.6 217 32.3
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 2.5e-17 93.6 132 40.2
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 5.6e-17 92.4 87 48.3
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.6e-17 92.4 198 33.8
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 5.6e-17 92.4 94 47.9
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.5e-17 91.7 101 44.6
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.2e-16 91.3 175 34.3
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 1.2e-16 91.3 76 53.9
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 6.2e-16 89.0 124 41.9
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 6.2e-16 89.0 168 34.5
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.1e-15 88.2 106 45.3
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 3.1e-15 86.7 99 50.5
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 3.1e-15 86.7 92 46.7
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.2e-15 85.9 132 39.4
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 8.9e-15 85.1 179 31.8
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 2.0e-14 84.0 98 46.9
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.4e-14 83.2 100 44.0
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 9.9e-14 81.6 212 29.7
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.7e-13 80.9 169 30.8
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 2.2e-13 80.5 86 50.0
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 4.9e-13 79.3 95 42.1
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-13 79.3 143 34.3
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 4.9e-13 79.3 255 26.3
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 1.4e-12 77.8 99 39.4
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 4.1e-12 76.3 88 43.2
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 5.4e-12 75.9 81 44.4
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 9.2e-12 75.1 232 28.4
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.2e-11 74.7 111 40.5
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.6e-11 74.3 93 41.9
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 2.7e-11 73.6 157 34.4
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.5e-11 73.2 107 34.6
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 1.3e-10 71.2 119 37.8
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-10 70.9 195 29.2
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.7e-10 70.9 55 56.4
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 1.7e-10 70.9 92 42.4
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-10 70.9 55 50.9
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 5.1e-10 69.3 127 36.2
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 8.6e-10 68.6 83 43.4
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 1.1e-09 68.2 56 55.4
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 1.5e-09 67.8 84 44.0
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 1.9e-09 67.4 86 41.9
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 1.9e-09 67.4 67 46.3
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.9e-09 67.4 55 49.1
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.5e-09 67.0 84 45.2
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 3.3e-09 66.6 70 48.6
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 9.6e-09 65.1 74 50.0
ATR0575G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 1.2e-08 64.7 51 51.0
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.2e-08 64.7 68 48.5
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.2e-08 64.7 93 41.9
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.2e-08 64.7 68 48.5
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.1e-08 63.9 54 50.0
ATR0661G179 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.6e-08 63.2 72 44.4
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.7e-08 62.8 61 50.8
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.7e-08 62.8 61 50.8
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 4.7e-08 62.8 68 47.1
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 8.1e-08 62.0 36 66.7
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-07 61.2 118 31.4
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 1.4e-07 61.2 43 58.1
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-07 61.2 71 42.3
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 8.9e-07 58.5 59 45.8
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 1.2e-06 58.2 52 50.0
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.0e-06 57.4 66 45.5
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 2.6e-06 57.0 210 26.2
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.6e-06 57.0 169 24.9
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 3.4e-06 56.6 64 46.9
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 3.4e-06 56.6 66 45.5
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 3.4e-06 56.6 77 41.6
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 4.4e-06 56.2 95 38.9
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 4.4e-06 56.2 79 39.2
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 5.8e-06 55.8 49 46.9
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.6e-06 55.5 79 39.2
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.9e-06 55.1 178 28.1
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 9.9e-06 55.1 49 44.9


User provided reference genes

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