Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.3e-62 243.0 140 100.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.4e-58 228.4 140 87.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.2e-57 225.7 141 86.5
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.9e-57 225.3 140 85.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.7e-57 224.9 140 85.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.7e-57 224.9 140 86.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-56 221.5 151 83.4
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.1e-56 221.5 151 83.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 5.4e-56 221.1 149 82.6
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.1e-55 219.2 152 86.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 4.6e-55 218.0 155 84.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 4.6e-55 218.0 155 84.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 80.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.8e-52 208.8 140 78.6
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.8e-52 208.8 140 79.3
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.7e-52 208.0 140 77.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.1e-51 206.8 140 77.1
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.8e-51 206.1 140 77.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 78.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 78.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 6.8e-51 204.1 140 77.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.9e-51 203.8 140 77.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.9e-51 203.8 140 77.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 77.9
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 77.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 77.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 77.9
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 77.9
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 78.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.4e-50 201.8 140 76.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.4e-50 201.8 140 77.1
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 76.4
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 76.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 76.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 77.1
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.6e-50 200.7 140 76.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.3e-49 199.9 140 76.4
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.7e-49 199.5 140 76.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 75.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 75.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.8e-49 198.4 141 75.2
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.8e-49 198.4 140 73.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 3.8e-49 198.4 140 75.7
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.9e-49 198.0 140 76.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 6.4e-49 197.6 141 74.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 6.4e-49 197.6 141 75.2
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.4e-49 197.6 140 75.7
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 6.4e-49 197.6 140 75.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 8.4e-49 197.2 136 79.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 8.4e-49 197.2 140 75.0
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 8.4e-49 197.2 143 74.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.9e-48 196.1 140 75.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.4e-48 195.7 147 72.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 75.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 74.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 75.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.4e-48 194.5 140 74.3
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 9.2e-48 193.7 140 74.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 9.2e-48 193.7 139 74.1
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.6e-47 193.0 140 74.3
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.6e-47 193.0 140 72.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.7e-47 192.2 139 73.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.7e-47 192.2 140 73.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 72.9
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 3.5e-47 191.8 142 75.4
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 6.0e-47 191.0 139 74.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 7.8e-47 190.7 136 77.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 7.8e-47 190.7 140 72.9
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 72.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 72.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.0e-46 190.3 141 72.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 73.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 73.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-46 189.9 140 72.9
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.3e-46 189.9 140 72.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.3e-46 189.9 140 72.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.7e-46 189.5 164 68.3
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 3.0e-46 188.7 139 73.4
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.0e-46 188.7 141 71.6
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.6e-46 187.6 140 72.1
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 6.6e-46 187.6 140 71.4
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 8.6e-46 187.2 139 72.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 8.6e-46 187.2 140 71.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 8.6e-46 187.2 140 71.4
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-45 186.8 143 69.2
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.5e-45 186.4 140 72.1
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.5e-45 185.7 148 74.3
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.5e-45 185.7 139 71.9
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.5e-45 185.7 143 68.5
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.3e-45 185.3 160 68.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.3e-45 184.9 140 70.0
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-44 183.3 144 69.4
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.1e-44 182.6 139 70.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.1e-44 182.6 139 70.5
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.7e-44 181.4 176 60.2
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.2e-44 181.0 144 68.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.4e-43 179.9 146 69.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.8e-43 179.5 140 70.0
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.4e-43 179.1 148 70.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.1e-43 178.7 140 71.4
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 8.9e-43 177.2 154 64.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.0e-42 176.0 168 59.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.0e-42 176.0 138 70.3
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.6e-42 174.1 140 69.3
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.7e-41 172.9 141 68.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-41 172.9 140 65.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.9e-41 172.2 174 58.6
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.8e-41 171.8 140 66.4
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.0e-38 163.7 140 62.9
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 8.7e-38 160.6 170 54.1
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-37 159.8 136 67.6
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.9e-37 159.5 136 68.4
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.3e-37 158.7 114 75.4
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.3e-37 158.3 117 74.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.1e-35 153.7 140 59.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.4e-35 152.5 115 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 5.3e-35 151.4 140 57.9
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 9.0e-35 150.6 110 76.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 9.0e-35 150.6 119 69.7
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.6e-34 147.5 117 70.9
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.7e-33 146.4 138 56.5
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 5.4e-32 141.4 114 68.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 9.3e-32 140.6 138 60.1
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-31 140.2 127 65.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 7.9e-31 137.5 131 67.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.3e-30 136.7 158 53.2
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.3e-30 136.0 116 66.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 3.9e-30 135.2 164 54.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.5e-29 132.5 98 70.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.3e-29 131.7 116 65.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 82.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 9.0e-27 124.0 80 81.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.6e-26 122.5 79 82.3
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.3e-25 120.2 137 51.8
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 76 84.2
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.9e-25 119.0 118 58.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.8e-25 118.6 80 77.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.4e-25 117.9 80 76.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.7e-23 112.5 69 84.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.9e-22 108.6 113 56.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.9e-22 108.6 69 81.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 6.2e-20 101.3 86 65.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 3.1e-19 99.0 86 64.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.2e-18 97.1 131 46.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.8e-17 92.0 69 72.5
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-15 85.1 71 66.2
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.7e-14 81.3 57 73.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 8.7e-14 80.9 71 62.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-13 79.7 86 53.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-13 79.7 86 53.5
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.5e-13 79.3 104 48.1
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.7e-12 75.5 59 67.8
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.8e-11 73.2 138 35.5
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-10 69.7 47 70.2
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 2.6e-10 69.3 77 51.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-10 68.9 44 75.0
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 3.4e-10 68.9 47 70.2
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.2e-09 66.2 41 75.6
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 6.5e-09 64.7 37 86.5
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 6.5e-09 64.7 37 86.5
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-08 63.5 97 45.4
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.4e-08 63.5 97 45.4
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-07 59.3 56 64.3


User provided reference genes

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