Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G8970 Aethionema arabicum HOM05D001705 ORTHO05D002725 4.7e-63 245.0 189 100.0
Thhalv10007504m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 4.5e-21 105.5 62 77.4
AT1G33600 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 8.4e-20 101.3 62 77.4
CARHR033050 Cardamine hirsuta HOM05D001705 ORTHO05D002725 8.4e-20 101.3 60 76.7
TAR362G0902 Trochodendron aralioides HOM05D001705 ORTHO05D002725 1.2e-18 97.4 64 71.9
Sp1g29040 Schrenkiella parvula HOM05D001705 ORTHO05D002725 1.6e-18 97.1 51 84.3
AL1G47970 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 4.6e-18 95.5 51 84.3
AT1G33590 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 1.3e-17 94.0 51 82.4
BcaB07g32995 Brassica carinata HOM05D001705 ORTHO05D002725 3.9e-17 92.4 51 82.4
Carub.0001s3181 Capsella rubella HOM05D001705 ORTHO05D002725 5.1e-17 92.0 61 67.2
A09p32710 Brassica napus HOM05D001705 ORTHO05D002725 8.7e-17 91.3 51 82.4
Carub.0001s3175 Capsella rubella HOM05D001705 ORTHO05D002725 8.7e-17 91.3 53 77.4
AT1G33670 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 1.9e-16 90.1 61 70.5
BcaC08g43848 Brassica carinata HOM05D001705 ORTHO05D002725 2.5e-16 89.7 51 80.4
C06p40480 Brassica napus HOM05D001705 ORTHO05D002725 2.5e-16 89.7 51 80.4
BolC6t36382H Brassica oleracea HOM05D001705 ORTHO05D002725 2.5e-16 89.7 51 80.4
BolC6t39384H Brassica oleracea HOM05D001705 ORTHO05D002725 2.5e-16 89.7 51 80.4
BraA09t38811Z Brassica rapa HOM05D001705 ORTHO05D002725 2.5e-16 89.7 51 80.4
GSVIVG01037229001 Vitis vinifera HOM05D001705 ORTHO05D002725 2.5e-16 89.7 222 29.7
Duzib177G0070 Durio zibethinus HOM05D001705 ORTHO05D002725 2.1e-15 86.7 54 74.1
C06p12310 Brassica napus HOM05D001705 ORTHO05D002725 2.8e-15 86.3 60 65.0
CANSAT78G1516 Cannabis sativa HOM05D001705 ORTHO05D002725 3.7e-15 85.9 64 60.9
AT2G26380 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 4.8e-15 85.5 51 74.5
FvH4_2g00740 Fragaria vesca HOM05D001705 ORTHO05D002725 6.2e-15 85.1 62 64.5
Carub.0003s2751 Capsella rubella HOM05D001705 ORTHO05D002725 8.2e-15 84.7 50 74.0
ClCG11G008390 Citrullus lanatus HOM05D001705 ORTHO05D002725 1.1e-14 84.3 60 66.7
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 1.1e-14 84.3 50 72.0
AL1G47980 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 1.8e-14 83.6 53 77.4
MBI11_g18033_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D002725 1.8e-14 83.6 54 66.7
Manes.18G115700 Manihot esculenta HOM05D001705 ORTHO05D002725 1.8e-14 83.6 51 72.5
Nn1g03278 Nelumbo nucifera HOM05D001705 ORTHO05D002725 2.4e-14 83.2 58 63.8
AL3G46500 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 3.1e-14 82.8 54 68.5
Sp6g07180 Schrenkiella parvula HOM05D001705 ORTHO05D002725 3.1e-14 82.8 51 72.5
AL4G19020 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 9.0e-14 81.3 50 72.0
AL1G48080 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 1.2e-13 80.9 53 71.7
AT1G33610 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 1.2e-13 80.9 64 64.1
Medtr3g009050 Medicago truncatula HOM05D001705 ORTHO05D002725 1.2e-13 80.9 53 69.8
BcaB03g13692 Brassica carinata HOM05D001705 ORTHO05D002725 1.5e-13 80.5 53 77.4
THA.LOC104815822 Tarenaya hassleriana HOM05D001705 ORTHO05D002725 1.5e-13 80.5 51 72.5
ATR0099G046 Amborella trichopoda HOM05D001705 ORTHO05D002725 2.0e-13 80.1 64 60.9
TPR.G28708 Trifolium pratense HOM05D001705 ORTHO05D002725 2.0e-13 80.1 53 66.0
TWI75G0918 Tripterygium wilfordii HOM05D001705 ORTHO05D002725 2.6e-13 79.7 53 66.0
C06p43950 Brassica napus HOM05D001705 ORTHO05D002725 3.4e-13 79.3 69 59.4
Ca_14116_v3 Cicer arietinum L. HOM05D001705 ORTHO05D002725 3.4e-13 79.3 53 62.3
Thecc.03G189200 Theobroma cacao HOM05D001705 ORTHO05D002725 3.4e-13 79.3 51 68.6
AL1G48070 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 5.8e-13 78.6 60 61.7
RcHm_v2.0_Chr6g0251101 Rosa chinensis HOM05D001705 ORTHO05D002725 5.8e-13 78.6 59 61.0
Carub.0001s3176 Capsella rubella HOM05D001705 ORTHO05D002725 7.6e-13 78.2 51 70.6
Cpa.g.sc21.89 Carica papaya HOM05D001705 ORTHO05D002725 7.6e-13 78.2 51 68.6
Eucgr.F04074 Eucalyptus grandis HOM05D001705 ORTHO05D002725 7.6e-13 78.2 51 68.6
Lj3g0017306 Lotus japonicus HOM05D001705 ORTHO05D002725 7.6e-13 78.2 53 62.3
A07p36490 Brassica napus HOM05D001705 ORTHO05D002725 1.0e-12 77.8 51 70.6
BraA07t31220Z Brassica rapa HOM05D001705 ORTHO05D002725 1.0e-12 77.8 51 70.6
QL09p001766 Quercus lobata HOM05D001705 ORTHO05D002725 1.0e-12 77.8 51 64.7
AL1G47990 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 1.3e-12 77.4 51 70.6
BcaC05g27800 Brassica carinata HOM05D001705 ORTHO05D002725 1.3e-12 77.4 53 73.6
C05p37970 Brassica napus HOM05D001705 ORTHO05D002725 1.3e-12 77.4 53 73.6
BolC5t32528H Brassica oleracea HOM05D001705 ORTHO05D002725 1.3e-12 77.4 53 73.6
FAN24G2062 Fragaria x ananassa HOM05D001705 ORTHO05D002725 1.3e-12 77.4 51 70.6
QL09p001786 Quercus lobata HOM05D001705 ORTHO05D002725 1.3e-12 77.4 51 66.7
BraA05t21305Z Brassica rapa HOM05D001705 ORTHO05D002725 1.7e-12 77.0 53 73.6
Cfa008070 Carpinus fangiana HOM05D001705 ORTHO05D002725 1.7e-12 77.0 51 66.7
CARHR033100 Cardamine hirsuta HOM05D001705 ORTHO05D002725 2.9e-12 76.3 64 59.4
Cfa008069 Carpinus fangiana HOM05D001705 ORTHO05D002725 2.9e-12 76.3 51 68.6
Cc10_g16350 Coffea canephora HOM05D001705 ORTHO05D002725 2.9e-12 76.3 49 67.3
FAN06G0734 Fragaria x ananassa HOM05D001705 ORTHO05D002725 3.8e-12 75.9 51 66.7
FAN06G1483 Fragaria x ananassa HOM05D001705 ORTHO05D002725 3.8e-12 75.9 51 68.6
Hma1.2p1_0238F.1_g099660 Hydrangea macrophylla HOM05D001705 ORTHO05D002725 3.8e-12 75.9 51 64.7
Hma1.2p1_1771F.1_g301630 Hydrangea macrophylla HOM05D001705 ORTHO05D002725 3.8e-12 75.9 51 64.7
Lj7A419T37 Lonicera japonica HOM05D001705 ORTHO05D002725 3.8e-12 75.9 51 68.6
Atru.chr1.269 Acer truncatum HOM05D001705 ORTHO05D002725 4.9e-12 75.5 51 64.7
BcaB05g24595 Brassica carinata HOM05D001705 ORTHO05D002725 4.9e-12 75.5 51 68.6
FAN20G3138 Fragaria x ananassa HOM05D001705 ORTHO05D002725 4.9e-12 75.5 51 66.7
Actinidia23296 Actinidia chinensis HOM05D001705 ORTHO05D002725 6.5e-12 75.1 51 66.7
MELO3C008095.2 Cucumis melo HOM05D001705 ORTHO05D002725 6.5e-12 75.1 51 70.6
Migut.C01385 Erythranthe guttata HOM05D001705 ORTHO05D002725 6.5e-12 75.1 50 66.0
Thhalv10007627m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 6.5e-12 75.1 62 58.1
Gohir.A08G230800 Gossypium hirsutum HOM05D001705 ORTHO05D002725 8.4e-12 74.7 51 64.7
Gohir.D08G251200 Gossypium hirsutum HOM05D001705 ORTHO05D002725 8.4e-12 74.7 51 64.7
Gorai.004G267900 Gossypium raimondii HOM05D001705 ORTHO05D002725 8.4e-12 74.7 51 64.7
PGR083G1536 Punica granatum HOM05D001705 ORTHO05D002725 8.4e-12 74.7 51 66.7
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 1.1e-11 74.3 50 66.0
Lj7C419G2 Lonicera japonica HOM05D001705 ORTHO05D002725 1.1e-11 74.3 51 66.7
FAN27G0614 Fragaria x ananassa HOM05D001705 ORTHO05D002725 1.4e-11 73.9 51 64.7
Psat5g230720 Pisum sativum HOM05D001705 ORTHO05D002725 3.2e-11 72.8 53 60.4
COL.COLO4_30249 Corchorus olitorius HOM05D001705 ORTHO05D002725 4.2e-11 72.4 50 60.0
CsaV3_2G033250 Cucumis sativus L. HOM05D001705 ORTHO05D002725 4.2e-11 72.4 51 66.7
AT1G33612 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 5.5e-11 72.0 59 55.9
Lsat_1_v5_gn_1_52900 Lactuca sativa HOM05D001705 ORTHO05D002725 5.5e-11 72.0 51 64.7
Lalb_Chr15g0079781 Lupinus albus HOM05D001705 ORTHO05D002725 7.1e-11 71.6 50 62.0
VMungo1080G1397 Vigna mungo HOM05D001705 ORTHO05D002725 7.1e-11 71.6 51 58.8
AL1G48010 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 9.3e-11 71.2 58 60.3
Thhalv10010003m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 9.3e-11 71.2 48 72.9
CAN.G625.35 Capsicum annuum HOM05D001705 ORTHO05D002725 1.2e-10 70.9 63 54.0
Thhalv10007598m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 1.2e-10 70.9 53 64.2
Nn6g34382 Nelumbo nucifera HOM05D001705 ORTHO05D002725 1.2e-10 70.9 56 55.4
Phvul.005G007100 Phaseolus vulgaris HOM05D001705 ORTHO05D002725 1.2e-10 70.9 51 58.8
Sc19g0002890 Simmondsia chinensis HOM05D001705 ORTHO05D002725 1.2e-10 70.9 54 53.7
Carub.0001s3118 Capsella rubella HOM05D001705 ORTHO05D002725 1.6e-10 70.5 53 66.0
Carub.0001s3119 Capsella rubella HOM05D001705 ORTHO05D002725 2.1e-10 70.1 53 66.0
Carub.0001s3177 Capsella rubella HOM05D001705 ORTHO05D002725 2.1e-10 70.1 48 72.9
Sed0015966 Sechium edule HOM05D001705 ORTHO05D002725 2.1e-10 70.1 51 64.7
Carub.0003s2752 Capsella rubella HOM05D001705 ORTHO05D002725 2.7e-10 69.7 46 69.6
Thhalv10009975m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 2.7e-10 69.7 50 66.0
Sabra13G0083600 Salix brachista HOM05D001705 ORTHO05D002725 3.5e-10 69.3 53 66.0
CSS0019475 Camellia sinensis var. sinensis HOM05D001705 ORTHO05D002725 4.6e-10 68.9 53 62.3
Ciclev10019952m.g Citrus clementina HOM05D001705 ORTHO05D002725 4.6e-10 68.9 51 58.8
Glyma.06G319700 Glycine max HOM05D001705 ORTHO05D002725 4.6e-10 68.9 48 60.4
MD05G1002900 Malus domestica HOM05D001705 ORTHO05D002725 4.6e-10 68.9 53 66.0
Peaxi162Scf00078g00710 Petunia axillaris HOM05D001705 ORTHO05D002725 4.6e-10 68.9 65 52.3
Sabra13G0083500 Salix brachista HOM05D001705 ORTHO05D002725 4.6e-10 68.9 53 64.2
Sabra13G0084800 Salix brachista HOM05D001705 ORTHO05D002725 4.6e-10 68.9 53 64.2
Sabra13G0084900 Salix brachista HOM05D001705 ORTHO05D002725 4.6e-10 68.9 53 64.2
PGSC0003DMG400016908 Solanum tuberosum HOM05D001705 ORTHO05D002725 7.9e-10 68.2 65 49.2
Potri.013G098850 Populus trichocarpa HOM05D001705 ORTHO05D002725 1.0e-09 67.8 53 62.3
Potri.013G098900 Populus trichocarpa HOM05D001705 ORTHO05D002725 1.0e-09 67.8 53 62.3
Rhsim12G0002600 Rhododendron simsii HOM05D001705 ORTHO05D002725 1.0e-09 67.8 53 62.3
BcaB01g01462 Brassica carinata HOM05D001705 ORTHO05D002725 1.3e-09 67.4 62 54.8
Carub.0003s2745 Capsella rubella HOM05D001705 ORTHO05D002725 1.3e-09 67.4 53 62.3
BolC6t39467H Brassica oleracea HOM05D001705 ORTHO05D002725 1.8e-09 67.0 58 60.3
Prupe.8G006300 Prunus persica HOM05D001705 ORTHO05D002725 1.8e-09 67.0 53 64.2
Glyma.06G319640 Glycine max HOM05D001705 ORTHO05D002725 2.3e-09 66.6 49 55.1
DCAR_015978 Daucus carota HOM05D001705 ORTHO05D002725 3.9e-09 65.9 53 60.4
CiPaw.03G013800 Carya illinoinensis HOM05D001705 ORTHO05D002725 5.1e-09 65.5 50 60.0
Sopen10g023690 Solanum pennellii HOM05D001705 ORTHO05D002725 6.7e-09 65.1 53 56.6
SGA_v2.0_scaffold118G32615 Striga asiatica HOM05D001705 ORTHO05D002725 6.7e-09 65.1 48 58.3
Thhalv10001857m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 1.5e-08 63.9 53 64.2
Thhalv10009576m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 1.5e-08 63.9 62 53.2
Solyc10g052880.1 Solanum lycopersicum HOM05D001705 ORTHO05D002725 1.5e-08 63.9 65 47.7
Peaxi162Scf00078g00078 Petunia axillaris HOM05D001705 ORTHO05D002725 2.5e-08 63.2 53 52.8
Migut.F00454 Erythranthe guttata HOM05D001705 ORTHO05D002725 3.3e-08 62.8 53 60.4
BcaC08g46459 Brassica carinata HOM05D001007 ORTHO05D008005 4.3e-08 62.4 46 65.2
Migut.F00453 Erythranthe guttata HOM05D001705 ORTHO05D002725 5.7e-08 62.0 59 54.2
Thhalv10001853m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 1.6e-07 60.5 60 50.0
Oeu023580.1 Olea europaea HOM05D001705 ORTHO05D002725 1.6e-07 60.5 53 52.8
Nitab4.5_0000213g0030 Nicotiana tabacum HOM05D001705 ORTHO05D002725 2.8e-07 59.7 65 46.2
Thhalv10009786m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 9.0e-06 54.7 47 57.4


User provided reference genes

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