Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.1e-39 166.0 73 100.0
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 4.5e-30 134.0 59 96.6
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 5.9e-30 133.7 59 94.9
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 1.3e-29 132.5 59 93.2
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 1.7e-29 132.1 59 91.5
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 2.9e-29 131.3 59 93.2
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.9e-29 131.3 59 93.2
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 4.2e-28 127.5 59 86.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 4.2e-28 127.5 59 88.1
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 5.5e-28 127.1 59 88.1
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 5.5e-28 127.1 59 86.4
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 5.5e-28 127.1 59 83.1
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 5.5e-28 127.1 59 83.1
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 5.5e-28 127.1 59 86.4
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 7.2e-28 126.7 59 88.1
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 7.2e-28 126.7 59 88.1
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 7.2e-28 126.7 59 86.4
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 9.4e-28 126.3 59 88.1
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 9.4e-28 126.3 59 88.1
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 9.4e-28 126.3 59 88.1
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.2e-27 125.9 59 86.4
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.6e-27 125.6 59 84.7
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 2.1e-27 125.2 59 84.7
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 2.1e-27 125.2 59 84.7
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.1e-27 125.2 59 84.7
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.1e-27 125.2 59 84.7
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.1e-27 125.2 59 84.7
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 2.7e-27 124.8 59 84.7
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.7e-27 124.8 59 83.1
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.7e-27 124.8 59 83.1
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 2.7e-27 124.8 59 83.1
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 3.6e-27 124.4 59 83.1
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.6e-27 124.4 59 83.1
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.6e-27 124.4 59 83.1
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 3.6e-27 124.4 59 83.1
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 4.7e-27 124.0 60 83.3
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 4.7e-27 124.0 59 81.4
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 6.1e-27 123.6 59 81.4
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 8.0e-27 123.2 57 87.7
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.0e-26 122.9 59 83.1
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.0e-26 122.9 59 83.1
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-26 122.5 59 81.4
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-26 122.5 59 81.4
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 1.4e-26 122.5 59 84.7
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 1.4e-26 122.5 57 86.0
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.8e-26 122.1 59 81.4
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.8e-26 122.1 59 79.7
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 1.8e-26 122.1 59 81.4
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.8e-26 122.1 60 81.7
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 1.8e-26 122.1 59 79.7
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 2.3e-26 121.7 60 80.0
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 3.0e-26 121.3 59 86.4
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 3.0e-26 121.3 59 86.4
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 3.0e-26 121.3 59 86.4
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 3.0e-26 121.3 59 86.4
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 3.0e-26 121.3 59 86.4
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 4.0e-26 120.9 59 81.4
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 4.0e-26 120.9 59 79.7
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 4.0e-26 120.9 59 83.1
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 4.0e-26 120.9 59 79.7
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 5.2e-26 120.6 57 84.2
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 5.2e-26 120.6 59 81.4
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 6.8e-26 120.2 59 79.7
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 6.8e-26 120.2 59 78.0
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 6.8e-26 120.2 59 81.4
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 8.8e-26 119.8 59 78.0
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 8.8e-26 119.8 59 81.4
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 8.8e-26 119.8 57 84.2
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 1.2e-25 119.4 59 78.0
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 1.2e-25 119.4 59 81.4
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.2e-25 119.4 59 83.1
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 1.2e-25 119.4 59 78.0
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 1.2e-25 119.4 59 78.0
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 1.5e-25 119.0 59 76.3
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 1.5e-25 119.0 59 79.7
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.5e-25 119.0 58 81.0
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 2.0e-25 118.6 59 86.4
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 2.0e-25 118.6 59 76.3
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 2.6e-25 118.2 59 78.0
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.6e-25 118.2 59 81.4
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.6e-25 118.2 59 81.4
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.6e-25 118.2 59 76.3
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 3.4e-25 117.9 59 79.7
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 4.4e-25 117.5 59 78.0
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 4.4e-25 117.5 59 79.7
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 4.4e-25 117.5 59 78.0
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 4.4e-25 117.5 59 78.0
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 4.4e-25 117.5 59 79.7
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 76.3
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 78.0
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 78.0
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 78.0
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 79.7
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.7e-25 117.1 76 65.8
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.7e-25 117.1 76 65.8
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 5.7e-25 117.1 59 78.0
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 7.5e-25 116.7 59 76.3
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 7.5e-25 116.7 59 76.3
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 7.5e-25 116.7 59 76.3
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 7.5e-25 116.7 59 79.7
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 7.5e-25 116.7 59 78.0
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 9.8e-25 116.3 59 79.7
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 9.8e-25 116.3 59 79.7
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 9.8e-25 116.3 59 79.7
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 1.3e-24 115.9 59 78.0
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 1.3e-24 115.9 59 79.7
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.7e-24 115.5 59 78.0
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 1.7e-24 115.5 59 76.3
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.2e-24 115.2 59 76.3
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 2.2e-24 115.2 59 74.6
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 2.2e-24 115.2 59 79.7
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.7e-24 114.4 59 74.6
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.7e-24 114.4 59 74.6
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 4.9e-24 114.0 59 78.0
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 3.1e-23 111.3 59 76.3
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 3.1e-23 111.3 59 76.3
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 5.4e-23 110.5 59 72.9
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.6e-22 109.0 56 78.6
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 1.6e-22 109.0 57 75.4
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 4.5e-22 107.5 60 68.3
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.0e-21 106.3 56 71.4
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.0e-21 106.3 56 71.4
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.0e-21 106.3 59 67.8
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 3.8e-21 104.4 59 69.5
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 3.3e-20 101.3 59 67.8
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 5.5e-20 100.5 57 68.4
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 9.5e-20 99.8 59 69.5
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 1.2e-19 99.4 58 63.8
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 2.1e-19 98.6 59 62.7
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.8e-19 98.2 64 65.6
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.8e-19 98.2 64 65.6
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 2.8e-19 98.2 58 65.5
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 7.5e-17 90.1 47 76.6
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.8e-15 85.5 57 57.9
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-13 77.0 57 52.6
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.5e-12 75.9 40 77.5
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.0e-10 69.7 41 63.4
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 4.0e-10 67.8 35 68.6
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 4.9e-08 60.8 32 75.0


User provided reference genes

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