Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.4e-115 418.3 269 100.0
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 8.8e-47 191.4 262 55.3
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 8.8e-47 191.4 262 55.3
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 5.7e-46 188.7 184 62.5
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.3e-45 187.6 184 62.0
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.7e-45 187.2 184 62.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-43 180.6 185 59.5
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.6e-43 180.6 185 59.5
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.6e-43 180.6 185 59.5
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.6e-43 180.6 171 60.8
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 3.5e-43 179.5 176 59.1
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 2.9e-42 176.4 157 62.4
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 2.9e-42 176.4 157 62.4
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 6.5e-42 175.3 176 56.8
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.1e-41 174.5 181 56.4
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-41 174.5 157 63.1
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.9e-41 173.7 183 53.6
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.9e-41 173.7 187 58.3
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.5e-41 173.3 148 60.8
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 5.5e-41 172.2 148 62.2
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 3.0e-39 166.4 165 58.2
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 4.0e-39 166.0 169 56.2
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 5.2e-39 165.6 182 54.4
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.2e-39 165.6 157 63.1
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-38 164.5 184 52.7
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.2e-38 164.5 150 60.0
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-38 164.1 175 55.4
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.5e-38 164.1 181 55.2
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.0e-38 163.7 151 58.3
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 2.6e-38 163.3 193 51.8
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.7e-37 160.6 195 52.8
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 2.2e-37 160.2 178 53.4
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.8e-37 159.8 170 54.1
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 4.8e-37 159.1 195 50.8
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-36 157.9 269 43.1
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-36 157.9 269 43.1
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.1e-36 157.9 269 43.1
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.1e-36 157.9 283 43.1
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 2.4e-36 156.8 185 51.9
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 5.4e-36 155.6 135 61.5
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 5.4e-36 155.6 135 61.5
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 7.0e-36 155.2 162 55.6
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 9.1e-36 154.8 138 60.9
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.2e-35 154.5 140 57.9
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.6e-35 154.1 186 50.0
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-35 153.7 171 52.0
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 3.5e-35 152.9 139 56.1
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 4.5e-35 152.5 201 47.8
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 7.7e-35 151.8 171 52.0
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 7.7e-35 151.8 174 52.3
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.0e-34 151.4 135 59.3
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.0e-34 151.4 155 54.2
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 1.7e-34 150.6 188 55.9
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.7e-34 150.6 188 55.9
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.7e-34 150.6 182 52.2
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.7e-34 150.6 194 49.5
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.3e-34 150.2 134 59.7
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 2.3e-34 150.2 140 60.0
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.9e-34 149.8 170 52.9
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 2.9e-34 149.8 163 53.4
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 2.9e-34 149.8 149 55.7
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.9e-34 149.8 138 57.2
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 5.0e-34 149.1 136 57.4
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 5.0e-34 149.1 148 55.4
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 6.5e-34 148.7 135 57.8
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 8.6e-34 148.3 133 59.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.6e-34 148.3 138 55.1
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 8.6e-34 148.3 152 56.6
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 8.6e-34 148.3 140 56.4
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.1e-33 147.9 159 54.7
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.5e-33 147.5 197 47.2
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.5e-33 147.5 138 58.7
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.9e-33 147.1 138 59.4
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 2.5e-33 146.7 202 46.0
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.2e-33 146.4 167 52.7
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 4.2e-33 146.0 166 50.0
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 7.2e-33 145.2 135 57.0
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 7.2e-33 145.2 167 53.3
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.2e-33 145.2 159 54.7
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.2e-32 144.4 181 48.6
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 2.1e-32 143.7 181 46.4
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.8e-32 143.3 130 56.9
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 3.6e-32 142.9 135 57.8
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 6.1e-32 142.1 164 53.7
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 8.0e-32 141.7 148 53.4
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 8.0e-32 141.7 180 47.2
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.0e-31 141.4 186 47.3
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.0e-31 139.8 151 55.0
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 5.2e-31 139.0 131 58.8
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.8e-31 138.7 135 55.6
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 8.8e-31 138.3 138 52.2
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.5e-30 137.5 155 53.5
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 2.0e-30 137.1 127 59.1
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.6e-30 136.7 155 54.2
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.4e-30 136.0 135 53.3
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 5.7e-30 135.6 181 48.1
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 9.8e-30 134.8 265 41.1
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 9.8e-30 134.8 134 55.2
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 2.2e-29 133.7 135 53.3
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.8e-29 133.3 155 52.9
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 2.8e-29 133.3 135 56.3
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.7e-29 132.9 155 52.3
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.7e-29 132.9 155 52.3
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 4.9e-29 132.5 138 51.4
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.9e-29 132.5 154 52.6
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 8.3e-29 131.7 159 49.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 2.4e-28 130.2 182 46.2
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.1e-28 129.8 135 51.1
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 3.1e-28 129.8 130 54.6
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.7e-27 126.7 190 44.2
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.7e-27 126.7 130 53.8
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 5.9e-27 125.6 163 49.7
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.8e-27 125.2 155 51.6
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.7e-26 124.0 153 46.4
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 2.3e-26 123.6 189 42.9
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 2.9e-26 123.2 130 50.8
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 5.0e-26 122.5 126 53.2
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 6.6e-26 122.1 166 46.4
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 8.6e-26 121.7 130 53.1
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 8.6e-26 121.7 166 46.4
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.1e-25 121.3 130 52.3
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.3e-25 119.4 137 51.8
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 2.1e-24 117.1 135 48.9
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.6e-24 116.3 103 58.3
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.8e-23 114.0 130 50.8
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.8e-23 114.0 132 49.2
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.8e-23 112.1 176 43.8
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.7e-21 107.5 132 51.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.3e-18 97.8 174 43.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 3.0e-18 96.7 136 45.6
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.9e-18 96.3 110 50.9
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.4e-15 87.8 119 44.5
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 2.3e-15 87.0 190 35.8
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.5e-14 82.0 185 36.2
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 3.9e-10 69.7 89 58.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.9e-10 69.7 180 35.0
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 5.0e-10 69.3 95 46.3
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 1.1e-09 68.2 89 58.4
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 2.8e-08 63.5 112 43.8
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 1.1e-07 61.6 60 60.0


User provided reference genes

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