Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1363.2 706 100.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1254.6 703 91.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1241.1 703 90.8
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1240.7 704 90.1
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1240.7 703 90.6
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1239.2 703 90.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1239.2 703 90.6
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1237.6 702 90.6
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1237.2 706 89.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1236.5 703 90.2
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1230.7 704 90.1
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 704 88.8
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1194.1 701 87.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 701 87.4
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 701 87.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 701 87.2
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 701 87.2
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1181.4 701 86.4
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 0.0e+00 1176.4 704 86.5
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 700 81.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 700 81.3
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1121.7 700 81.0
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 700 81.4
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 702 80.8
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 699 80.4
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 700 80.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1114.0 705 80.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 703 80.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 703 79.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 697 80.8
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 698 80.7
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1109.0 699 80.4
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 698 80.5
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 701 79.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1107.8 700 80.3
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 702 79.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 699 79.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 706 79.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 700 80.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 704 78.7
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 704 79.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1105.1 698 79.5
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1104.0 704 80.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 697 79.2
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 700 79.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 701 79.2
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1102.4 700 80.4
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1101.3 700 79.9
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 699 79.3
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 700 79.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 702 79.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 701 79.0
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 700 80.1
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 700 79.3
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 702 78.9
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 700 78.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1095.1 704 78.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 698 78.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 699 79.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1090.9 698 79.2
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 703 78.5
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 698 78.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 705 78.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 701 77.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 699 78.5
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 698 78.4
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 701 77.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 700 77.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1078.9 698 79.1
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 4.8e-312 1073.9 664 81.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.4e-311 1072.4 703 76.4
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.6e-310 1068.9 727 75.4
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.6e-310 1068.9 701 76.0
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.7e-310 1067.8 701 76.9
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 5.8e-308 1060.4 700 75.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.2e-307 1058.5 699 77.7
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.2e-307 1058.5 699 77.7
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-306 1055.8 696 76.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 7.1e-306 1053.5 698 77.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.3e-304 1049.3 702 77.5
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.3e-303 1044.3 698 77.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 4.3e-303 1044.3 705 76.2
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.6e-302 1042.3 692 76.4
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.8e-302 1041.6 705 76.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.3e-299 1032.7 703 76.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.2e-297 1026.2 676 77.8
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 4.3e-295 1017.7 698 75.1
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 7.4e-295 1016.9 699 74.8
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.2e-294 1015.4 700 74.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.9e-293 1010.4 721 73.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-292 1008.1 705 72.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 727 72.8
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 8.5e-291 1003.4 699 73.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.2e-290 1001.1 662 76.1
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.4e-288 996.1 612 81.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.3e-288 995.3 658 78.0
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 4.3e-287 991.1 618 81.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.1e-285 986.5 698 71.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.1e-285 983.4 693 74.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-284 982.6 673 75.8
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 7.2e-282 973.8 698 73.2
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.4e-277 958.7 647 74.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.7e-273 945.3 590 80.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.6e-268 929.5 704 69.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.4e-263 911.4 702 67.4
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.0e-261 904.0 544 84.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.8e-256 889.4 569 80.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.8e-256 887.5 725 66.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.8e-249 865.5 704 65.1
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.1e-241 839.3 700 65.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 5.8e-239 831.2 723 63.8
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-234 815.8 538 78.1
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.7e-233 811.6 571 72.0
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.4e-223 778.5 525 74.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.6e-217 760.0 450 87.1
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 8.1e-209 731.1 695 54.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.8e-198 695.7 628 56.5
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.7e-193 679.1 611 61.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.5e-186 656.4 403 82.9
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.2e-185 651.7 393 84.0
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-184 649.4 550 65.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.0e-174 615.5 630 50.0
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.4e-167 592.8 641 48.0
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.2e-165 585.1 638 49.2
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.9e-159 565.5 520 60.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-146 524.6 393 72.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.2e-141 506.1 642 41.7
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-140 503.4 635 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.2e-135 488.0 636 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.0e-131 474.9 626 42.8
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.1e-116 424.1 708 39.4
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.8e-116 423.7 306 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.6e-106 390.6 401 51.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-104 384.8 249 79.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.8e-95 352.4 399 52.6
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.3e-76 292.0 213 65.7
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.1e-70 270.0 225 65.8
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.0e-57 226.9 125 84.8
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-53 215.7 171 69.6
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.1e-39 166.8 129 57.4
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.7e-29 133.7 78 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 9.1e-27 126.3 101 61.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.1e-24 119.4 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 6.1e-23 113.6 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.3e-22 111.7 95 56.8
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.2e-15 89.4 56 75.0
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 9.2e-11 73.2 55 61.8
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.5e-08 65.1 56 51.8
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 2.5e-08 65.1 56 51.8
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.3e-06 58.5 30 76.7


User provided reference genes

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