Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 9.7e-124 446.8 224 100.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.0e-80 302.4 222 73.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.5e-76 290.0 221 68.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.4e-76 288.9 201 77.6
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 2.4e-74 282.7 222 66.2
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 2.4e-74 282.7 222 66.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 9.2e-74 280.8 222 67.6
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-73 280.4 219 66.2
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.2e-73 280.4 219 65.8
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.6e-73 280.0 219 65.8
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 3.5e-73 278.9 219 66.2
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 6.0e-73 278.1 222 65.3
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 6.0e-73 278.1 222 64.9
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 6.0e-73 278.1 219 65.8
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 6.0e-73 278.1 222 64.9
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 2.3e-72 276.2 222 64.4
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.9e-71 273.1 222 65.3
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.5e-71 272.7 222 64.9
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.6e-70 270.0 219 66.2
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.7e-70 268.5 225 62.2
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 8.1e-70 267.7 217 64.1
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 9.8e-68 260.8 224 62.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 4.9e-67 258.5 222 62.2
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 4.6e-65 251.9 215 62.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.7e-64 250.0 217 61.8
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 3.0e-64 249.2 220 61.8
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.0e-64 249.2 220 61.8
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 5.1e-64 248.4 221 60.2
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.9e-63 246.5 217 61.3
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.5e-63 246.1 204 66.2
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.3e-63 245.7 221 58.4
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.3e-63 245.4 222 59.5
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 5.6e-63 245.0 219 59.8
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.6e-63 245.0 221 58.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 7.3e-63 244.6 220 60.0
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-62 243.8 217 60.8
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-62 243.8 220 60.9
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 1.2e-62 243.8 221 57.5
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.2e-62 243.8 210 61.0
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.2e-62 243.8 215 61.4
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.6e-62 243.4 221 57.9
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.6e-62 243.4 219 58.9
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.1e-62 243.0 222 60.4
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.8e-62 242.7 219 60.3
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 8.1e-62 241.1 221 57.0
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.4e-61 240.4 215 59.5
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.3e-61 239.6 213 58.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.3e-61 239.6 219 58.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.1e-61 239.2 221 57.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.2e-61 238.4 215 60.5
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.5e-60 236.9 220 58.2
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.5e-60 236.9 220 58.6
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 2.0e-60 236.5 214 57.5
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.0e-60 236.5 220 58.6
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.0e-60 236.5 217 59.0
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.6e-60 236.1 210 59.5
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 2.6e-60 236.1 220 57.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 3.4e-60 235.7 213 59.2
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 4.4e-60 235.3 210 58.6
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 4.4e-60 235.3 215 59.1
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.4e-60 235.3 221 56.1
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 7.6e-60 234.6 214 57.9
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 9.9e-60 234.2 221 55.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.3e-59 233.8 224 55.4
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.7e-59 233.4 212 58.5
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.7e-59 233.4 208 58.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.7e-59 233.4 215 58.6
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.9e-59 232.6 214 56.5
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 3.7e-59 232.3 210 57.6
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.7e-59 232.3 220 58.6
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 4.9e-59 231.9 215 57.2
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 8.4e-59 231.1 222 57.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-58 230.7 219 58.4
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.4e-58 230.3 213 56.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 2.4e-58 229.6 210 58.1
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-58 229.6 220 57.3
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-58 229.6 220 57.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.4e-58 229.6 213 58.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 4.1e-58 228.8 217 57.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.1e-58 228.8 221 56.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 9.2e-58 227.6 221 55.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 4.6e-57 225.3 221 57.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.0e-57 224.9 222 54.5
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 6.6e-56 221.5 220 51.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 2.5e-55 219.5 210 55.7
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.3e-55 218.8 225 54.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 5.6e-55 218.4 210 56.2
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 9.6e-55 217.6 217 55.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 9.6e-55 217.6 214 53.3
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.1e-54 216.5 219 52.5
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 2.1e-54 216.5 219 53.0
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.4e-53 213.8 220 53.2
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-53 213.4 220 53.6
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 2.4e-53 213.0 221 51.6
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 3.1e-53 212.6 222 52.7
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.8e-53 211.5 220 52.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 8.9e-53 211.1 198 58.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.2e-52 210.7 214 52.3
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.5e-52 210.3 217 51.6
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.0e-52 209.9 227 53.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 3.4e-52 209.1 219 53.0
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.4e-52 208.8 214 55.1
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 5.8e-52 208.4 217 54.4
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.3e-51 207.2 222 51.4
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.2e-51 206.5 217 50.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.4e-50 203.8 220 51.8
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.9e-50 203.4 325 41.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.4e-50 203.0 204 53.4
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.0e-49 198.4 202 52.5
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.8e-49 198.0 201 52.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-48 196.8 197 54.8
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 3.0e-48 196.1 217 47.9
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.9e-48 195.7 213 51.6
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.6e-48 194.9 263 45.6
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.1e-47 194.1 213 51.2
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-47 194.1 220 48.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-47 194.1 240 49.6
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.9e-47 193.4 219 50.7
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 4.3e-47 192.2 192 54.7
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 2.4e-45 186.4 194 53.1
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.9e-43 178.7 209 50.7
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.9e-40 169.1 255 43.1
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 4.3e-39 165.6 110 73.6
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 4.3e-39 165.6 239 44.4
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 9.6e-39 164.5 131 65.6
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 6.4e-35 151.8 219 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 5.5e-34 148.7 214 39.3
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 8.7e-32 141.4 214 39.7
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 4.3e-31 139.0 105 62.9
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 4.3e-31 139.0 87 73.6
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.2e-30 135.2 221 37.6
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 6.9e-29 131.7 148 53.4
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.2e-28 131.0 76 80.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-28 129.4 103 65.0
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.9e-26 123.6 74 79.7
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.5e-26 123.2 74 79.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.5e-25 119.4 74 77.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-23 113.6 139 46.8
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 9.6e-23 111.3 212 34.9
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 3.1e-21 106.3 192 34.9
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 9.0e-21 104.8 186 37.1
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.0e-20 103.6 136 47.8
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-17 93.2 129 41.9
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.9e-17 91.7 65 69.2
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-16 91.3 77 61.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.8e-16 90.5 69 66.7
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 3.0e-16 89.7 106 47.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.9e-15 87.0 65 64.6
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.7e-15 85.5 67 64.2
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.3e-14 84.3 219 30.6
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.0e-13 78.2 45 77.8
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.0e-11 74.7 52 67.3
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.9e-10 70.5 45 73.3
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.6e-09 65.9 129 34.9
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.0e-08 64.7 151 29.8
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.9e-08 62.8 68 48.5
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-07 61.2 95 42.1
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.5e-07 60.8 91 44.0
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 3.3e-07 59.7 91 42.9
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 3.3e-07 59.7 101 32.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 7.4e-07 58.5 45 62.2
C08p18260 Brassica napus HOM05D023231 ORTHO05D031966 8.2e-06 55.1 82 39.0


User provided reference genes

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