Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 0.0e+00 1217.2 614 100.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 5.7e-267 924.1 521 88.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.7e-266 922.5 521 89.6
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.8e-266 921.8 521 89.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.8e-266 921.8 521 89.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.8e-266 921.8 521 89.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.7e-266 921.4 521 89.8
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.4e-264 914.8 520 88.5
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.4e-264 914.8 519 88.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-263 912.5 522 88.1
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 6.5e-263 910.6 521 88.1
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 8.5e-263 910.2 522 87.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 8.5e-263 910.2 522 87.7
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 9.4e-262 906.7 520 87.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-261 906.4 522 87.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.7e-261 905.2 522 88.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 8.8e-260 900.2 520 87.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 8.8e-260 900.2 520 87.1
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.3e-259 898.3 520 86.9
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 4.4e-259 897.9 520 86.9
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 9.7e-259 896.7 521 86.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.7e-258 894.8 553 82.3
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.8e-258 894.4 520 86.5
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.4e-233 812.4 519 80.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.2e-227 793.5 519 77.5
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.3e-226 790.0 518 77.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.9e-226 788.1 519 77.5
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.9e-226 788.1 523 77.4
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 8.3e-226 787.3 518 77.0
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.1e-225 785.0 528 75.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.0e-225 784.3 523 76.5
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.7e-224 782.3 519 76.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 7.8e-224 780.8 521 76.8
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 7.8e-224 780.8 523 76.3
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.0e-223 780.4 520 74.6
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-223 780.0 517 76.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.9e-223 778.9 521 76.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 8.6e-223 777.3 520 76.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.1e-222 776.9 525 75.4
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.9e-222 776.2 519 76.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.5e-222 775.8 518 76.4
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.5e-222 773.9 526 74.5
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.0e-221 770.8 520 75.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 8.0e-221 770.8 523 74.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.0e-220 768.5 523 74.6
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.5e-219 764.2 519 74.8
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.7e-218 763.1 530 72.5
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.9e-218 762.3 517 74.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.9e-218 761.5 533 73.2
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.4e-217 760.0 527 73.6
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 5.4e-217 758.1 520 74.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.9e-215 751.9 519 74.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.9e-214 749.6 519 72.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.1e-213 746.1 524 74.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.8e-213 745.7 534 71.7
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 3.6e-213 745.3 520 71.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.8e-212 743.0 454 81.7
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 3.1e-212 742.3 542 70.8
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.5e-211 740.0 521 72.7
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.7e-210 736.5 455 81.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.9e-210 735.7 520 72.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.9e-210 735.7 519 71.1
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.9e-210 734.9 523 72.1
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-209 733.8 515 73.4
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.4e-209 732.6 518 71.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.2e-209 732.3 520 72.3
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 6.0e-208 728.0 520 72.1
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 6.0e-208 728.0 479 76.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.3e-207 726.9 521 71.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 3.0e-207 725.7 519 71.5
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.9e-207 725.3 518 71.0
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.6e-207 724.5 517 72.1
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 6.6e-207 724.5 495 74.3
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 6.6e-207 724.5 494 73.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 8.6e-207 724.2 521 71.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.9e-206 723.0 519 71.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.9e-206 723.0 514 72.4
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 9.5e-206 720.7 520 70.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.1e-205 717.6 522 70.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.4e-204 716.8 519 71.9
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.3e-204 716.1 521 69.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.2e-204 714.9 524 69.3
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.2e-204 714.9 521 69.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 8.9e-204 714.1 527 70.4
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-203 712.6 522 69.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.6e-203 712.6 469 77.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.7e-202 709.9 469 77.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.2e-202 709.5 524 69.7
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.5e-198 694.1 427 81.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.1e-196 690.6 522 66.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 6.8e-196 688.0 522 68.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 3.8e-194 682.2 519 67.1
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.9e-194 681.8 521 67.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 6.4e-194 681.4 519 67.1
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 8.4e-194 681.0 521 66.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-193 680.6 522 66.5
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.1e-192 676.4 520 66.0
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.5e-192 675.6 521 65.5
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 5.1e-191 671.8 517 66.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 8.7e-191 671.0 528 64.4
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.5e-190 669.5 517 66.7
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.5e-190 669.5 454 72.9
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.2e-189 667.2 528 67.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.1e-188 664.1 522 64.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.9e-188 661.4 443 77.4
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 5.8e-187 658.3 519 64.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.9e-185 653.3 493 66.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.9e-185 653.3 455 71.0
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.4e-185 651.7 519 63.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.3e-183 647.1 529 62.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.0e-180 635.6 532 61.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.4e-177 626.3 436 73.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 4.2e-177 625.5 522 60.7
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.5e-171 605.5 576 56.2
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.9e-170 602.1 382 78.3
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.3e-166 589.0 379 77.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.5e-158 563.1 456 62.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 3.1e-156 556.2 520 56.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.0e-155 553.5 377 74.0
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 5.1e-151 538.9 393 69.2
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-148 531.2 529 55.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.8e-146 522.7 377 70.3
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.8e-141 505.8 310 79.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.0e-139 500.4 353 71.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 5.2e-135 485.7 347 70.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.6e-128 463.0 464 49.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.1e-128 462.2 315 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 9.7e-126 454.9 522 46.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.0e-124 448.7 456 49.8
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.2e-115 421.4 531 43.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.9e-106 390.2 537 39.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.6e-96 357.8 216 82.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-91 340.1 194 87.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.6e-91 339.7 261 68.6
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 5.1e-74 283.1 151 94.7
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.4e-60 238.4 198 64.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.1e-59 234.6 173 69.4
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.5e-51 207.2 171 60.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.4e-44 185.3 141 68.8
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.7e-43 181.0 142 66.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-42 179.1 161 57.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 8.7e-42 176.0 144 63.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.5e-36 156.8 135 60.0
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.7e-33 146.0 97 70.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 9.1e-31 139.4 149 53.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.3e-25 120.9 131 54.2
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.0e-22 111.7 77 72.7
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.3e-21 109.0 483 23.8
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.9e-21 107.8 492 23.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 9.4e-20 102.8 71 69.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.2e-12 77.4 63 60.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.2e-12 77.4 63 60.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.4e-07 62.4 46 56.5
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.1e-07 61.2 45 55.6
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 9.1e-07 59.7 53 52.8
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 1.2e-06 59.3 151 26.5
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 4.5e-06 57.4 40 65.0


User provided reference genes

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