Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G5100 Aethionema arabicum HOM05D003632 ORTHO05D005497 2.2e-57 225.3 108 100.0
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 3.4e-42 174.9 94 92.6
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 1.9e-40 169.1 94 89.4
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 1.9e-40 169.1 94 89.4
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 88.3
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 2.5e-40 168.7 94 89.4
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 5.5e-40 167.5 94 88.3
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 7.1e-40 167.2 94 88.3
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 1.2e-39 166.4 94 87.2
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 1.2e-39 166.4 94 88.3
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 4.6e-39 164.5 94 87.2
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 1.0e-38 163.3 94 86.2
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 1.0e-38 163.3 94 86.2
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 1.8e-38 162.5 94 85.1
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 3.9e-38 161.4 94 85.1
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 3.9e-38 161.4 95 84.2
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 3.9e-38 161.4 94 86.2
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 3.9e-38 161.4 94 85.1
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 3.9e-38 161.4 94 85.1
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 5.1e-38 161.0 94 86.2
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 6.7e-38 160.6 94 86.2
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 6.7e-38 160.6 94 84.0
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 8.7e-38 160.2 94 84.0
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 8.7e-38 160.2 94 83.0
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 8.7e-38 160.2 94 85.1
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 1.1e-37 159.8 94 85.1
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 1.1e-37 159.8 94 84.0
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 1.1e-37 159.8 94 83.0
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 1.5e-37 159.5 94 85.1
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 1.5e-37 159.5 94 84.0
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 1.5e-37 159.5 94 85.1
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 1.5e-37 159.5 94 85.1
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 1.5e-37 159.5 94 84.0
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 85.1
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 1.9e-37 159.1 94 84.0
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 2.5e-37 158.7 94 81.9
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 2.5e-37 158.7 94 84.0
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 2.5e-37 158.7 94 84.0
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 3.3e-37 158.3 94 84.0
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 3.3e-37 158.3 94 81.9
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 3.3e-37 158.3 94 81.9
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 3.3e-37 158.3 94 84.0
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 4.3e-37 157.9 94 84.0
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 4.3e-37 157.9 94 84.0
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 5.7e-37 157.5 94 84.0
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 5.7e-37 157.5 94 83.0
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 7.4e-37 157.1 94 84.0
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 7.4e-37 157.1 94 84.0
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 7.4e-37 157.1 94 84.0
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.4e-37 157.1 94 83.0
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 9.7e-37 156.8 94 84.0
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 9.7e-37 156.8 94 84.0
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 9.7e-37 156.8 94 83.0
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 1.3e-36 156.4 94 84.0
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 1.3e-36 156.4 94 84.0
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 1.3e-36 156.4 94 84.0
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 1.3e-36 156.4 94 84.0
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 1.6e-36 156.0 94 84.0
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 81.9
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 79.8
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 79.8
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 79.8
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 83.0
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 85.1
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 2.2e-36 155.6 94 79.8
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 2.8e-36 155.2 94 83.0
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 2.8e-36 155.2 94 81.9
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.8e-36 155.2 94 81.9
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.8e-36 155.2 94 81.9
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 2.8e-36 155.2 94 81.9
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 3.7e-36 154.8 94 80.9
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 3.7e-36 154.8 94 81.9
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 3.7e-36 154.8 94 81.9
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 6.3e-36 154.1 94 79.8
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 6.3e-36 154.1 94 79.8
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 6.3e-36 154.1 94 79.8
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 6.3e-36 154.1 94 77.7
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 6.3e-36 154.1 94 77.7
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 8.2e-36 153.7 116 70.7
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 8.2e-36 153.7 94 83.0
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-35 152.9 94 84.0
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-35 152.9 94 84.0
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 1.4e-35 152.9 94 83.0
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.4e-35 152.9 94 84.0
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 2.4e-35 152.1 94 81.9
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 4.1e-35 151.4 94 80.9
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 4.1e-35 151.4 94 79.8
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 4.1e-35 151.4 94 81.9
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 4.1e-35 151.4 94 79.8
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 4.1e-35 151.4 94 79.8
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.3e-35 151.0 93 83.9
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 6.9e-35 150.6 94 79.8
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 6.9e-35 150.6 94 81.9
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 6.9e-35 150.6 100 78.0
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 7.6e-34 147.1 104 74.0
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 1.7e-33 146.0 94 77.7
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 2.7e-31 138.7 94 72.3
SMO117G0011 Selaginella moellendorffii HOM05D003632 ORTHO05D005497 3.6e-31 138.3 95 70.5
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 7.9e-31 137.1 94 72.3
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 1.4e-30 136.3 94 73.4
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 2.5e-29 132.1 94 68.1
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 7.4e-29 130.6 81 82.7
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 3.7e-28 128.3 94 73.4
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 2.4e-27 125.6 94 72.3
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 3.1e-27 125.2 94 70.2
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 5.3e-27 124.4 94 62.8
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 1.3e-25 119.8 94 59.6
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 5.0e-25 117.9 94 62.8
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 9.4e-24 113.6 61 86.9
MCO10G275 Micromonas commoda HOM05D003632 ORTHO05D005497 2.1e-23 112.5 94 56.4
Oeu015113.1 Olea europaea HOM05D003632 ORTHO05D005497 4.7e-23 111.3 62 88.7
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 2.3e-22 109.0 82 72.0
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 6.7e-22 107.5 62 83.9
FvH4_1g30300 Fragaria vesca HOM05D003632 ORTHO05D005497 5.7e-13 77.8 48 85.4
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 4.5e-10 68.2 94 46.8


User provided reference genes

Program Settings