Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 0.0e+00 1146.3 600 100.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.3e-295 1019.2 603 88.4
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 2.2e-295 1018.5 602 88.5
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.4e-294 1015.0 600 87.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.4e-294 1015.0 600 87.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.1e-294 1013.1 603 88.6
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 5.9e-293 1010.4 600 88.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 8.5e-292 1006.5 603 87.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.5e-291 1005.0 603 88.4
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.1e-290 1001.9 600 87.5
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.0e-289 998.0 607 85.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.0e-289 998.0 608 86.3
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.3e-288 994.6 605 86.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.7e-288 993.8 600 86.5
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.7e-287 992.3 600 85.8
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-287 992.3 600 85.8
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.7e-287 992.3 600 85.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.5e-283 979.2 600 84.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.5e-283 978.4 600 84.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-269 932.6 550 84.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.3e-268 928.7 608 79.4
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-266 922.2 550 86.2
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.2e-256 889.8 600 78.8
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.4e-256 888.3 604 76.7
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 4.9e-255 884.4 600 78.5
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.3e-255 883.6 604 76.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.6e-253 877.9 604 78.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 6.0e-253 877.5 600 78.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.3e-252 876.3 592 78.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.3e-252 876.3 605 75.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.3e-252 875.5 604 76.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-251 872.5 605 76.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.5e-251 872.1 604 76.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.5e-251 872.1 603 75.6
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.3e-251 871.3 604 76.8
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 9.5e-251 870.2 604 75.7
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.5e-251 870.2 605 75.7
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-250 869.8 605 75.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.2e-250 869.8 602 75.9
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.2e-250 869.8 603 75.6
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.1e-250 869.0 599 76.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 2.8e-250 868.6 604 75.5
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 3.6e-250 868.2 603 76.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.3e-249 865.5 600 77.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.1e-249 865.1 606 75.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 8.9e-249 863.6 604 75.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.5e-248 862.8 605 75.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 9.8e-248 860.1 604 75.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.7e-247 858.2 600 76.5
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.4e-247 857.4 604 74.3
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 6.4e-247 857.4 598 75.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.2e-246 855.1 603 75.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 7.0e-246 854.0 600 75.3
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.6e-245 852.8 598 73.9
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 7.8e-245 850.5 604 75.5
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.3e-244 849.7 603 74.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.9e-244 848.2 603 74.1
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.0e-244 847.8 615 73.2
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.0e-244 847.8 603 74.1
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.0e-244 847.8 603 74.3
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.6e-244 847.0 599 75.0
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.6e-244 847.0 599 75.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.1e-243 846.7 603 74.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.1e-243 846.7 603 73.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.1e-243 846.7 610 73.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.5e-243 845.5 605 73.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.3e-243 845.1 600 75.3
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.3e-243 844.7 601 75.5
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.8e-242 842.0 603 73.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.6e-242 841.6 603 74.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 6.2e-242 840.9 603 73.3
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-241 839.3 615 69.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.8e-241 839.3 604 73.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.3e-241 839.0 603 74.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.3e-241 839.0 615 69.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.2e-240 836.6 601 73.2
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 4.4e-240 834.7 603 72.6
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.9e-239 832.0 603 72.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.7e-239 831.6 603 73.1
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 7.1e-238 827.4 604 72.8
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.7e-237 825.5 601 72.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.7e-237 825.5 604 73.0
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.0e-236 823.5 605 73.1
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.0e-236 823.5 605 71.6
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.7e-236 822.8 599 72.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.9e-236 821.6 604 72.5
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.3e-235 818.5 603 72.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 4.3e-235 818.1 599 72.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.2e-234 816.6 598 71.2
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.4e-233 812.4 599 71.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.1e-230 803.5 594 71.9
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.4e-230 802.4 614 70.0
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 3.5e-229 798.5 617 69.2
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.5e-229 798.5 599 71.5
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.5e-227 793.1 611 68.9
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 4.7e-226 788.1 604 69.4
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.2e-224 783.5 599 69.9
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.9e-223 778.9 600 69.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.8e-223 778.5 602 69.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 6.4e-223 777.7 599 69.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.9e-222 776.2 606 68.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.4e-222 775.8 599 70.5
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.2e-222 775.0 600 67.7
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 3.5e-221 771.9 604 68.7
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.6e-221 771.5 599 69.3
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.1e-218 760.8 605 69.1
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 9.0e-217 757.3 605 68.1
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.7e-215 753.1 616 66.7
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.2e-214 748.8 616 66.2
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.0e-212 743.8 605 66.8
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 5.1e-212 741.5 646 64.1
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.8e-209 733.0 497 81.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-209 733.0 604 65.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.0e-209 731.9 623 64.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 9.3e-206 720.7 877 49.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 3.5e-205 718.8 605 64.3
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 3.0e-204 715.7 604 65.6
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.5e-203 713.4 602 65.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.8e-202 709.1 603 65.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.6e-194 683.3 573 64.0
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.5e-190 668.3 475 73.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-166 590.9 605 57.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.2e-152 544.3 603 51.2
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.3e-151 540.8 606 51.8
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.9e-151 539.7 525 59.6
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.1e-145 521.2 603 51.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.5e-134 484.2 618 44.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 4.1e-129 466.1 600 50.0
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-124 451.1 599 45.9
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-82 311.6 210 73.3
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 4.2e-81 306.6 327 53.5
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.5e-81 306.2 244 63.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.4e-73 281.6 603 35.2
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.7e-61 241.5 239 61.9
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.1e-60 236.9 274 50.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 7.7e-59 232.6 588 31.6
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.5e-50 203.0 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.7e-43 181.0 152 64.5
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.3e-31 141.4 98 67.3
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 7.5e-30 136.3 79 84.8
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.3e-29 133.3 79 83.5
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 6.3e-29 133.3 603 25.7
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.5e-27 127.5 202 42.1
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.9e-21 107.1 79 65.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-15 89.4 122 40.2
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.6e-14 84.7 215 42.8
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 7.5e-14 83.2 90 48.9
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.6e-11 75.5 59 66.1


User provided reference genes

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