Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.7e-157 559.3 288 100.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.1e-76 290.8 297 57.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.3e-76 289.3 312 59.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-75 286.2 326 51.8
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.9e-72 276.2 296 56.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.4e-71 273.9 294 56.5
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.2e-71 272.7 300 56.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.2e-63 245.0 325 46.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.7e-62 242.3 294 55.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 7.9e-62 241.5 304 52.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 7.9e-62 241.5 304 52.3
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-61 240.4 304 52.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-56 224.2 302 49.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 8.5e-56 221.5 298 49.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.4e-53 214.2 309 43.7
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.0e-53 213.0 322 42.2
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 4.0e-53 212.6 309 43.7
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.0e-52 210.3 351 38.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.7e-52 208.8 316 41.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.7e-52 208.8 327 40.4
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 9.7e-52 208.0 341 39.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.4e-50 204.1 377 37.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.0e-50 201.8 302 41.4
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.0e-50 201.8 302 41.1
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.0e-49 200.3 312 43.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.5e-49 199.5 338 40.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.5e-49 199.5 334 40.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.0e-48 198.0 312 42.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-48 197.6 367 37.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-48 197.6 331 39.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.7e-48 197.2 324 40.7
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-48 196.8 362 37.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.9e-48 196.4 315 39.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.9e-48 196.4 312 42.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.9e-48 196.4 312 43.6
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.5e-48 194.9 336 40.8
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.9e-47 193.7 355 37.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.2e-47 193.0 371 36.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 4.2e-47 192.6 379 35.6
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.5e-47 192.2 355 38.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 9.4e-47 191.4 363 37.5
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.2e-46 191.0 365 35.9
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.2e-46 191.0 365 35.9
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.7e-46 189.9 344 39.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.6e-46 189.5 359 37.3
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.7e-46 189.1 338 38.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.7e-46 189.1 319 39.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.0e-46 188.3 334 39.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.0e-45 188.0 345 39.1
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.3e-45 186.8 363 35.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.3e-45 186.8 330 38.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.0e-45 186.0 326 39.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.0e-45 186.0 331 37.8
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.8e-45 184.9 345 37.4
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.0e-44 183.7 366 37.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.6e-44 183.3 335 40.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.6e-44 183.3 300 40.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.4e-44 182.6 336 37.8
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.7e-44 182.2 328 36.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 5.7e-44 182.2 289 39.1
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 5.7e-44 182.2 319 38.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 7.5e-44 181.8 306 40.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.5e-44 181.8 338 38.2
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 9.8e-44 181.4 325 35.7
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.1e-42 177.9 356 36.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.4e-42 177.6 363 36.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.8e-42 177.2 325 39.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-42 176.8 358 36.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.1e-42 176.0 341 37.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 7.0e-42 175.3 319 37.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 7.0e-42 175.3 316 37.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.5e-41 172.6 392 34.4
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.7e-41 171.8 299 37.8
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.0e-40 171.4 362 35.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.8e-40 169.5 400 33.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 8.5e-40 168.3 358 36.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.2e-39 166.4 365 33.7
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.5e-39 165.6 305 37.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.5e-39 164.9 365 32.9
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.6e-38 164.1 334 35.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-38 163.7 258 41.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-38 163.7 258 41.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.8e-38 163.3 300 38.7
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.0e-38 161.8 299 37.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-37 161.0 305 42.3
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.4e-37 161.0 340 37.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.4e-37 161.0 320 36.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.3e-37 160.2 344 34.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.8e-37 158.7 338 34.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.8e-37 158.3 346 33.8
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.0e-36 157.1 316 37.0
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.4e-36 156.4 397 32.5
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.7e-36 155.6 325 35.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 5.7e-36 155.6 335 37.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-35 154.1 303 35.3
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.8e-35 153.3 288 38.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-35 153.3 304 37.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 6.3e-35 152.1 315 36.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-34 150.2 301 33.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.1e-34 149.8 311 36.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 5.4e-34 149.1 132 57.6
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-32 144.1 368 31.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 6.6e-32 142.1 297 34.3
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-31 141.4 317 34.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.9e-31 140.6 379 32.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.9e-31 140.6 301 35.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.6e-31 139.0 316 35.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.6e-31 139.0 131 52.7
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.5e-31 138.3 213 40.4
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-30 137.5 364 29.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.6e-30 137.5 342 31.9
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-30 136.7 311 32.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.6e-30 136.3 300 34.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 4.7e-30 136.0 152 46.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.0e-29 134.8 194 43.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-29 134.4 339 31.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.0e-29 133.3 162 45.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 5.2e-29 132.5 303 34.7
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 6.8e-29 132.1 309 32.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-28 131.3 325 35.7
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-28 131.3 325 35.7
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-28 131.3 303 34.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.5e-28 131.0 174 45.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.0e-28 130.6 211 44.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.6e-28 130.2 115 55.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.4e-28 129.8 108 55.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 7.5e-28 128.6 148 48.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 7.5e-28 128.6 148 48.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.5e-28 128.6 148 48.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-27 127.5 289 32.9
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-27 126.3 149 43.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-26 124.4 95 58.9
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.4e-26 122.5 285 31.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 5.4e-26 122.5 112 54.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 9.2e-26 121.7 296 34.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 9.2e-26 121.7 296 34.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 9.2e-26 121.7 296 34.1
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.0e-25 120.6 181 41.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.6e-24 115.5 273 32.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-23 114.8 102 56.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-23 114.8 102 56.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-23 114.0 275 31.6
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.3e-23 113.2 206 36.9
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 5.6e-23 112.5 276 33.3
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.3e-21 107.1 108 54.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 3.1e-21 106.7 288 31.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.2e-20 104.8 111 52.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.4e-20 102.8 175 40.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.2e-19 100.5 111 45.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.2e-19 100.5 211 37.0
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.9e-18 97.4 273 31.9
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-18 97.4 148 39.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 7.0e-18 95.5 110 43.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.6e-17 94.4 91 45.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.6e-17 92.8 116 39.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.0e-16 91.7 138 39.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.0e-16 91.7 115 44.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.3e-16 91.3 292 28.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.3e-16 90.5 110 42.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-16 89.4 74 63.5
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-15 88.2 248 29.8
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.5e-15 87.8 288 29.9
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 4.3e-15 86.3 109 44.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.1e-14 84.0 74 59.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.8e-13 80.9 289 26.3
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.3e-13 80.5 205 28.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.9e-11 73.6 279 28.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.1e-07 61.6 161 31.7
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.1e-06 57.4 266 24.1


User provided reference genes

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