Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 5.0e-98 361.3 208 100.0
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.2e-64 250.4 212 68.9
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 6.1e-64 248.1 212 68.9
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 8.0e-64 247.7 213 69.0
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 8.0e-64 247.7 213 69.0
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 4.4e-62 241.9 184 73.9
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 9.8e-62 240.7 212 66.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 1.3e-61 240.4 214 68.2
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 4.1e-60 235.3 212 66.5
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.0e-59 233.0 213 67.1
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 3.8e-58 228.8 214 66.4
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.5e-54 216.9 207 61.4
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 7.0e-52 208.0 213 59.2
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 3.1e-47 192.6 226 58.0
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 3.1e-47 192.6 226 58.0
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 3.1e-47 192.6 226 58.0
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 3.1e-47 192.6 226 56.2
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.4e-46 189.1 181 65.2
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 7.5e-46 188.0 227 56.8
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 2.9e-45 186.0 226 54.0
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 7.3e-41 171.4 223 52.9
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.1e-39 166.0 209 52.6
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 8.9e-39 164.5 229 52.4
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 4.4e-38 162.2 215 50.7
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 9.9e-38 161.0 225 56.0
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.7e-37 160.2 227 48.0
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.6e-32 142.5 225 51.1
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 4.4e-30 135.6 227 50.7
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.1e-28 131.0 133 57.1
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 1.6e-27 127.1 219 40.2
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 7.8e-27 124.8 197 42.1
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 6.6e-26 121.7 179 44.7
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 5.6e-25 118.6 223 41.3
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.2e-24 117.5 181 44.2
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 8.1e-24 114.8 179 42.5
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.4e-23 114.0 179 42.5
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.4e-23 114.0 154 45.5
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.4e-23 113.2 204 41.7
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 6.9e-23 111.7 243 35.8
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.2e-22 110.9 178 42.1
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.2e-22 110.9 201 42.8
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 1.5e-22 110.5 192 42.2
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 2.6e-22 109.8 189 41.8
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 5.8e-22 108.6 189 41.3
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 5.8e-22 108.6 216 38.9
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 5.8e-22 108.6 213 39.0
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 5.8e-22 108.6 212 38.7
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.7e-21 107.1 193 43.0
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 2.2e-21 106.7 233 36.5
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 2.2e-21 106.7 168 45.2
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 2.9e-21 106.3 223 40.4
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 4.9e-21 105.5 203 39.4
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 6.4e-21 105.1 210 41.9
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 6.4e-21 105.1 214 36.0
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 6.4e-21 105.1 184 45.1
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 8.4e-21 104.8 118 53.4
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.1e-20 104.4 251 41.4
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.4e-20 103.2 205 39.0
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.4e-20 103.2 144 44.4
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 2.4e-20 103.2 208 42.8
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 4.2e-20 102.4 152 44.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 5.4e-20 102.1 251 38.2
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 7.1e-20 101.7 164 43.3
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.2e-19 100.9 216 39.8
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 1.2e-19 100.9 197 41.1
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.6e-19 100.5 163 42.9
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.6e-19 100.5 181 42.5
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 2.7e-19 99.8 180 43.3
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.7e-19 99.8 168 45.2
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.7e-19 99.8 158 41.1
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.5e-19 99.4 173 42.2
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.5e-19 99.4 246 35.8
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.5e-19 99.4 246 35.4
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.5e-19 99.4 246 36.2
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.5e-19 99.4 156 48.7
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 7.8e-19 98.2 246 35.4
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 7.8e-19 98.2 175 37.1
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.0e-18 97.8 186 39.2
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.0e-18 97.8 156 42.3
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.0e-18 97.8 207 38.6
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.3e-18 97.4 206 36.4
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.3e-18 97.4 126 46.8
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 1.7e-18 97.1 202 41.1
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.7e-18 97.1 167 41.9
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 1.7e-18 97.1 172 43.6
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.3e-18 96.7 249 40.2
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.3e-18 96.7 103 57.3
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 3.0e-18 96.3 209 35.9
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.0e-18 96.3 156 42.3
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 3.0e-18 96.3 160 41.9
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 3.9e-18 95.9 216 37.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.9e-18 95.9 101 56.4
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 6.6e-18 95.1 100 55.0
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 6.6e-18 95.1 157 43.3
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 6.6e-18 95.1 168 40.5
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 8.7e-18 94.7 209 37.8
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.1e-17 94.4 99 54.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.1e-17 94.4 199 44.2
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.1e-17 94.4 201 39.3
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.5e-17 94.0 163 42.9
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.9e-17 93.6 179 37.4
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 2.5e-17 93.2 172 40.7
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 3.3e-17 92.8 165 41.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.3e-17 92.8 196 36.7
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 7.3e-17 91.7 227 36.6
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 7.3e-17 91.7 187 44.4
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 2.1e-16 90.1 165 40.0
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 3.6e-16 89.4 168 39.3
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 4.8e-16 89.0 182 35.7
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.8e-15 87.0 86 55.8
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.8e-15 87.0 188 34.6
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 2.4e-15 86.7 181 37.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 5.3e-15 85.5 177 43.5
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 6.9e-15 85.1 180 36.1
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.5e-14 84.0 206 37.9
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.5e-14 84.0 187 38.0
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.6e-14 83.2 181 35.9
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 3.4e-14 82.8 178 36.5
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 4.2e-12 75.9 109 45.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 5.4e-12 75.5 201 33.8
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 5.4e-12 75.5 187 34.2
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 9.3e-12 74.7 185 37.8
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.6e-11 73.9 147 42.2
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 2.7e-11 73.2 217 30.0
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 4.6e-11 72.4 169 36.7
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 3.0e-10 69.7 170 31.8
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 3.0e-10 69.7 153 35.3
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 3.4e-06 56.2 53 56.6
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 3.4e-06 56.2 191 28.8


User provided reference genes

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