Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 2.5e-199 698.7 394 100.0
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 1.0e-115 421.0 379 70.4
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 3.8e-115 419.1 373 72.1
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.4e-114 417.2 377 71.4
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 2.7e-113 412.9 375 69.6
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 3.8e-107 392.5 372 70.4
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 5.0e-107 392.1 372 70.2
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 2.1e-105 386.7 374 69.5
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 3.6e-105 386.0 373 69.7
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 6.1e-105 385.2 379 69.7
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 5.9e-100 368.6 375 64.5
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 3.0e-96 356.3 393 56.5
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 4.0e-96 355.9 380 65.8
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 5.2e-96 355.5 380 66.1
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 2.6e-95 353.2 398 54.5
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.2e-92 344.4 412 54.1
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 3.2e-90 336.3 397 52.6
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 6.1e-89 332.0 398 54.0
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 2.3e-88 330.1 388 56.4
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 2.3e-88 330.1 365 57.5
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 7.5e-87 325.1 414 50.2
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 9.8e-87 324.7 411 51.6
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 1.8e-85 320.5 403 53.6
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 9.1e-85 318.2 394 53.3
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 2.0e-84 317.0 404 53.0
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 2.5e-82 310.1 491 47.3
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 1.2e-81 307.8 409 51.6
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 1.2e-81 307.8 375 53.3
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 3.6e-81 306.2 374 53.5
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 8.0e-81 305.1 379 55.1
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 4.0e-80 302.8 288 54.2
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 6.8e-80 302.0 395 52.9
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 4.4e-79 299.3 363 53.2
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 3.7e-78 296.2 408 49.8
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 2.4e-77 293.5 408 53.4
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 9.2e-77 291.6 411 50.4
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 1.2e-76 291.2 365 53.4
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 1.7e-75 287.3 294 53.7
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 3.8e-75 286.2 376 52.1
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 8.6e-75 285.0 350 55.1
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.1e-74 284.6 339 54.0
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 1.1e-74 284.6 391 52.7
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 5.6e-74 282.3 295 53.2
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 9.5e-74 281.6 398 52.0
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 2.8e-73 280.0 414 51.0
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 2.8e-73 280.0 394 51.3
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 3.6e-73 279.6 364 50.0
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 1.0e-72 278.1 403 50.9
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 1.8e-72 277.3 356 52.8
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 2.3e-72 276.9 384 49.7
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 2.3e-72 276.9 357 55.5
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 2.3e-72 276.9 273 54.2
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 4.0e-72 276.2 343 56.3
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 6.8e-72 275.4 361 50.1
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 1.5e-71 274.2 354 51.4
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 2.0e-71 273.9 371 51.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.4e-69 267.7 307 50.8
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 1.6e-68 264.2 385 47.3
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 4.6e-68 262.7 230 56.1
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 1.3e-67 261.2 330 56.7
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 2.3e-67 260.4 375 50.7
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 5.0e-67 259.2 328 55.8
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 1.5e-66 257.7 347 53.0
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 3.3e-66 256.5 267 52.1
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 4.3e-66 256.1 404 49.3
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 7.3e-66 255.4 404 47.8
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 9.5e-66 255.0 355 55.5
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 1.2e-65 254.6 402 48.5
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 4.7e-65 252.7 330 57.6
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 4.7e-65 252.7 402 48.3
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 8.0e-65 251.9 383 51.7
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 3.1e-64 250.0 274 65.7
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 4.0e-64 249.6 261 52.9
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 5.2e-64 249.2 342 52.3
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 6.8e-64 248.8 200 63.0
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 7.5e-63 245.4 289 47.4
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 9.8e-63 245.0 291 50.2
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 4.9e-62 242.7 269 54.3
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 1.4e-61 241.1 279 48.4
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 1.3e-59 234.6 217 55.8
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 1.7e-59 234.2 198 60.6
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 3.9e-59 233.0 414 46.9
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.1e-58 231.5 391 46.5
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 1.5e-58 231.1 396 48.0
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 1.9e-58 230.7 368 46.7
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 1.9e-58 230.7 445 41.1
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 1.9e-58 230.7 372 44.4
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 4.3e-58 229.6 282 47.9
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 9.5e-58 228.4 363 49.9
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 1.2e-57 228.0 265 52.1
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 1.2e-57 228.0 273 52.4
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 1.6e-57 227.6 368 44.6
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 6.2e-57 225.7 344 41.0
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 4.0e-56 223.0 199 57.8
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 4.4e-55 219.5 183 58.5
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 7.5e-55 218.8 195 56.9
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 9.2e-53 211.8 220 49.5
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.6e-52 211.1 330 49.7
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 2.1e-52 210.7 285 46.0
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 2.3e-51 207.2 346 49.1
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 4.4e-47 193.0 166 59.0
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 1.7e-46 191.0 276 46.4
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 8.7e-43 178.7 253 44.3
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 5.6e-42 176.0 207 47.3
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 2.1e-41 174.1 346 42.8
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 6.2e-41 172.6 206 46.1
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 1.8e-40 171.0 310 35.2
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 5.4e-37 159.5 191 48.2
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 7.1e-37 159.1 216 43.1
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 5.6e-34 149.4 218 41.3
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 7.3e-34 149.1 276 38.0
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 6.9e-32 142.5 187 47.1
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 5.1e-27 126.3 170 40.6
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 1.9e-13 81.3 52 76.9
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.0e-11 75.5 74 56.8
SGA_v2.0_scaffold935G53736 Striga asiatica HOM05D002428 ORTHO05D008664 7.4e-10 69.3 172 49.4


User provided reference genes

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