Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 5.4e-69 264.2 135 100.0
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 1.2e-55 219.9 135 85.9
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 7.5e-55 217.2 134 85.1
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 2.9e-54 215.3 136 83.8
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 3.7e-54 214.9 134 85.8
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 1.2e-52 209.9 134 83.6
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 4.6e-52 208.0 134 81.3
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 4.3e-50 201.4 134 81.3
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 2.8e-49 198.7 135 80.7
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 2.8e-49 198.7 135 80.7
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 2.8e-49 198.7 135 80.7
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 8.1e-49 197.2 134 79.1
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 1.5e-47 193.0 134 76.9
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 2.6e-47 192.2 134 76.9
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 4.4e-47 191.4 130 77.7
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 1.4e-45 186.4 134 71.6
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 1.2e-44 183.3 129 74.4
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 2.7e-44 182.2 134 68.7
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 2.3e-43 179.1 127 72.4
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 3.0e-43 178.7 127 72.4
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 1.1e-42 176.8 112 76.8
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 4.3e-42 174.9 103 80.6
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 4.3e-42 174.9 134 68.7
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 4.3e-42 174.9 113 73.5
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 5.6e-42 174.5 113 72.6
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 7.3e-42 174.1 134 65.7
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 9.5e-42 173.7 134 66.4
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 9.5e-42 173.7 127 68.5
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 9.5e-42 173.7 120 70.8
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 1.2e-41 173.3 134 68.7
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.6e-41 172.9 115 73.9
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 1.6e-41 172.9 115 73.9
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 2.1e-41 172.6 101 79.2
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 3.6e-41 171.8 102 80.4
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 4.7e-41 171.4 101 78.2
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 4.7e-41 171.4 117 70.1
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 6.2e-41 171.0 134 65.7
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 8.1e-41 170.6 134 65.7
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 8.1e-41 170.6 117 67.5
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 8.1e-41 170.6 99 81.8
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 8.1e-41 170.6 103 78.6
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 1.4e-40 169.9 129 65.1
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.8e-40 169.5 104 75.0
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 2.3e-40 169.1 135 65.9
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 2.3e-40 169.1 120 72.5
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 2.3e-40 169.1 132 65.9
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 3.1e-40 168.7 115 72.2
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 4.0e-40 168.3 134 64.2
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 4.0e-40 168.3 115 73.9
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 4.0e-40 168.3 124 68.5
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 5.2e-40 167.9 119 72.3
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 5.2e-40 167.9 119 70.6
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 6.8e-40 167.5 134 64.9
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 8.9e-40 167.2 121 67.8
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 8.9e-40 167.2 121 67.8
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 1.5e-39 166.4 128 69.5
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.5e-39 166.4 130 63.8
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 1.5e-39 166.4 132 65.9
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 2.0e-39 166.0 130 63.8
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 2.0e-39 166.0 126 69.0
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 3.4e-39 165.2 135 65.9
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 5.8e-39 164.5 123 65.9
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 7.6e-39 164.1 132 63.6
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 7.6e-39 164.1 133 65.4
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 7.6e-39 164.1 103 73.8
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 9.9e-39 163.7 135 65.9
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 9.9e-39 163.7 103 72.8
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 1.3e-38 163.3 135 64.4
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 1.7e-38 162.9 135 64.4
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 2.2e-38 162.5 103 76.7
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 2.9e-38 162.2 132 62.1
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 2.9e-38 162.2 135 63.0
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 3.8e-38 161.8 102 72.5
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 4.9e-38 161.4 135 64.4
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 4.9e-38 161.4 107 72.9
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 8.4e-38 160.6 122 65.6
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 1.1e-37 160.2 134 63.4
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 2.4e-37 159.1 135 60.7
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.2e-37 158.7 115 65.2
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 2.7e-36 155.6 165 54.5
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 2.7e-36 155.6 134 61.2
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 2.7e-36 155.6 104 73.1
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 3.5e-36 155.2 91 79.1
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 6.0e-36 154.5 102 70.6
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 6.0e-36 154.5 122 61.5
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 1.0e-35 153.7 142 59.9
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 1.3e-35 153.3 98 73.5
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 1.3e-35 153.3 102 70.6
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.7e-35 152.9 129 59.7
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 3.0e-35 152.1 123 60.2
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 8.6e-35 150.6 129 58.1
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 1.1e-34 150.2 105 66.7
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 1.1e-34 150.2 127 59.1
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 1.1e-34 150.2 138 58.0
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 1.1e-34 150.2 99 69.7
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 4.3e-34 148.3 104 65.4
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.6e-33 145.2 101 69.3
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 1.8e-32 142.9 157 51.0
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 4.0e-32 141.7 156 48.7
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 5.2e-32 141.4 208 43.3
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 2.2e-30 136.0 173 46.8
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 2.9e-30 135.6 79 81.0
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 4.9e-30 134.8 119 59.7
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 4.9e-30 134.8 80 78.8
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 1.4e-29 133.3 111 64.9
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 4.6e-28 128.3 84 75.0
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 3.3e-26 122.1 75 74.7
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 7.3e-26 120.9 107 53.3
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 9.6e-26 120.6 84 69.0
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 6.9e-24 114.4 84 69.0
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 3.4e-23 112.1 92 69.6
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 7.6e-23 110.9 65 81.5
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 3.2e-21 105.5 61 78.7
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 3.2e-21 105.5 66 74.2
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 7.9e-20 100.9 101 52.5
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.8e-19 99.8 65 69.2
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 2.8e-17 92.4 75 60.0
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 9.0e-16 87.4 101 43.6
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 1.2e-15 87.0 65 64.6
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 5.8e-15 84.7 103 39.8
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 5.8e-15 84.7 98 39.8
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 4.2e-13 78.6 111 42.3
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 9.3e-13 77.4 57 64.9
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 2.7e-12 75.9 90 36.7
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.4e-08 63.5 71 54.9


User provided reference genes

Program Settings