Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 2552.3 1306 100.0
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 2017.3 1310 78.8
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 2008.0 1308 78.7
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 2000.7 1308 78.2
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1993.0 1309 77.7
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1952.9 1311 76.2
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1952.9 1311 76.2
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1947.6 1312 75.9
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1944.9 1314 75.6
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1934.5 1313 75.7
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 1873.6 1311 74.5
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1660.6 1308 66.5
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1298.1 1307 55.0
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1231.1 1304 50.5
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1230.3 1317 49.5
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1218.8 1309 50.9
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1213.4 1317 49.0
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1204.1 1302 49.6
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1200.3 1309 48.9
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1197.2 1278 49.5
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1191.4 1338 49.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1190.3 1309 49.0
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1189.9 1309 48.6
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1183.3 1302 49.9
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1181.8 1311 49.3
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1176.8 1280 50.2
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1171.4 1309 48.3
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1168.3 1420 47.2
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1166.0 1309 48.3
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1163.7 1311 49.7
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1156.0 1277 49.6
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1154.0 1287 49.3
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1141.7 1285 48.2
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1135.9 1280 48.2
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1120.5 1295 48.2
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1117.4 1283 47.3
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1115.1 1156 50.9
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1102.4 1280 47.1
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1099.7 1279 47.5
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1095.9 1291 45.9
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 0.0e+00 1093.2 680 80.7
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1092.4 1285 47.2
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1089.3 1267 47.6
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1078.5 1296 45.9
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 8.9e-312 1073.9 1273 46.5
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 3.6e-311 1072.0 1284 46.2
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 1.1e-310 1070.5 1313 46.2
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.8e-310 1069.7 1279 45.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.9e-304 1049.7 1273 46.0
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 2.3e-302 1042.7 1281 45.2
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 8.8e-302 1040.8 1134 49.9
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 2.6e-301 1039.3 1277 45.8
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 5.9e-298 1028.1 1315 44.2
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 7.7e-298 1027.7 1282 44.4
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 6.6e-297 1024.6 1299 44.9
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 3.3e-296 1022.3 1322 44.9
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 5.6e-296 1021.5 1330 44.6
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 9.5e-296 1020.8 1315 44.9
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.3e-294 1016.1 1153 48.6
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 4.0e-294 1015.4 1304 45.2
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 1.7e-289 1000.0 1150 47.3
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 3.3e-288 995.7 1280 43.5
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 1.1e-283 980.7 1283 43.4
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 2.4e-283 979.5 1294 42.8
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 6.0e-282 974.9 1293 43.5
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 3.0e-281 972.6 1221 44.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 1.1e-280 970.7 1133 46.2
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 1.2e-279 967.2 1039 49.9
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 1.5e-277 960.3 1279 42.7
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.7e-274 949.5 1055 49.1
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 2.3e-273 946.4 1339 41.4
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.2e-271 940.6 1175 45.5
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 4.7e-271 938.7 1296 41.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 7.8e-266 921.4 1123 46.0
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 5.6e-264 915.2 921 53.3
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.6e-263 913.7 1292 42.1
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.1e-263 913.3 1298 41.7
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 2.4e-262 909.8 1154 45.7
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 4.0e-262 909.1 1298 41.5
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.0e-257 894.4 1249 41.7
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.3e-257 894.0 1200 42.1
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.9e-257 892.5 652 71.9
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.3e-255 887.5 1242 41.4
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 1.1e-248 864.4 1262 41.3
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.6e-242 844.0 1290 40.4
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 7.2e-227 792.0 1121 40.9
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.3e-224 783.1 995 44.7
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.4e-222 777.7 1055 42.9
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.8e-217 760.8 871 48.3
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 7.0e-206 722.2 1186 37.5
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 7.7e-197 692.2 1096 39.0
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 8.0e-186 655.6 1332 33.9
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 9.8e-184 648.7 842 43.0
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.2e-178 631.7 800 43.0
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 4.4e-176 623.2 750 47.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 2.3e-172 610.9 990 37.3
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 4.3e-171 606.7 1029 37.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.5e-147 528.5 762 43.0
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 6.9e-145 519.6 462 57.4
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 2.0e-144 518.1 580 49.1
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 4.2e-142 510.4 679 43.0
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 3.6e-138 497.3 504 52.6
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.3e-124 451.4 396 60.4
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 9.7e-115 419.5 469 49.0
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.5e-107 394.8 711 38.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 6.5e-103 380.2 486 43.8
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 7.4e-99 366.7 1269 26.3
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 9.7e-91 339.7 1266 25.4
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 2.9e-71 275.0 602 34.7
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 4.0e-68 264.6 353 40.8
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 7.0e-65 253.8 375 36.3
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 4.6e-56 224.6 375 35.2
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.3e-55 223.0 160 73.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.9e-50 204.5 377 35.5
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 4.7e-45 188.0 110 84.5
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 8.9e-44 183.7 286 36.4
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 8.3e-42 177.2 193 47.7
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 8.4e-34 150.6 133 52.6
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.2e-32 146.7 193 46.1
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.5e-30 139.8 140 48.6
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 9.0e-28 130.6 186 40.3
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.1e-22 113.6 136 44.9
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.8e-20 106.3 480 22.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.6e-19 102.4 111 53.2
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 6.7e-15 87.8 207 28.5
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.6e-13 83.2 125 39.2
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 3.7e-13 82.0 75 50.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.7e-10 73.2 111 38.7
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 2.5e-09 69.3 59 62.7
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.2e-09 68.9 65 52.3
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 2.7e-08 65.9 115 37.4


User provided reference genes

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