Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 0.0e+00 1758.8 910 100.0
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 0.0e+00 1318.5 920 75.7
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 0.0e+00 1312.4 925 75.1
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 0.0e+00 1307.7 922 75.9
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 0.0e+00 1299.3 924 74.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 0.0e+00 1280.0 925 74.3
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 0.0e+00 1265.8 916 73.8
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1177.9 923 71.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1155.6 921 70.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1151.3 921 69.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1144.8 921 69.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 0.0e+00 1141.7 940 68.4
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1129.4 924 65.8
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 0.0e+00 1122.8 947 67.4
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 6.2e-312 1073.9 938 64.0
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.4e-268 928.7 950 55.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.9e-259 899.0 932 55.7
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 3.9e-256 888.6 918 55.9
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 4.8e-254 881.7 988 52.0
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.2e-252 877.1 941 54.9
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 8.4e-251 870.9 925 53.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.1e-249 866.3 897 55.3
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 7.9e-249 864.4 952 52.7
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.5e-247 860.1 984 51.2
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.2e-246 856.3 942 51.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.7e-246 855.5 941 53.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.1e-245 854.0 968 51.8
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.2e-244 850.5 921 52.9
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 4.5e-244 848.6 926 53.7
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.8e-243 845.5 987 51.1
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 8.5e-243 844.3 945 51.6
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.9e-242 843.2 921 53.4
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.9e-242 843.2 942 51.4
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.5e-242 841.6 921 52.7
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.2e-242 841.3 1016 50.4
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.1e-241 839.7 919 52.7
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.7e-241 839.3 933 52.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 4.6e-241 838.6 957 52.4
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.4e-240 837.0 931 51.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.5e-239 832.8 968 50.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 9.7e-239 830.9 779 58.4
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 6.3e-238 828.2 916 52.8
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 5.3e-237 825.1 954 51.9
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.5e-236 823.5 962 50.8
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 5.9e-236 821.6 917 52.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.5e-235 818.1 888 53.0
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.1e-234 817.4 977 50.6
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.9e-234 816.6 934 51.6
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.2e-234 815.8 932 51.4
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 4.2e-234 815.5 929 50.6
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.2e-233 813.9 891 52.7
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 6.1e-233 811.6 978 49.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.7e-231 805.1 989 47.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 8.2e-230 801.2 949 50.3
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.1e-229 799.3 893 52.2
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.3e-229 798.5 860 54.4
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 5.3e-229 798.5 978 48.5
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.6e-228 796.2 980 49.3
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.5e-228 795.8 965 50.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 3.5e-228 795.8 975 48.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 3.5e-228 795.8 991 47.8
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.7e-228 794.7 663 61.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.5e-226 790.4 1000 48.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.2e-226 788.9 932 49.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 4.2e-226 788.9 921 49.7
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.4e-224 783.9 960 49.1
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.3e-224 783.1 936 49.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 2.3e-224 783.1 976 47.2
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 6.7e-224 781.6 702 58.4
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 2.8e-222 776.2 1002 46.5
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 8.2e-222 774.6 1094 46.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.1e-221 772.7 911 50.5
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 7.7e-220 768.1 934 49.6
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.0e-219 767.7 972 46.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.7e-219 766.9 979 48.6
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.2e-219 766.5 882 51.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.9e-219 766.1 934 48.3
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.0e-219 765.4 904 47.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.9e-218 763.5 979 48.3
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 5.5e-218 761.9 936 48.7
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.1e-217 760.0 705 57.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.0e-217 758.1 1064 44.0
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 4.0e-216 755.7 657 59.7
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.8e-216 755.0 913 49.0
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.5e-215 751.5 947 47.8
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 9.8e-215 751.1 935 47.9
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.7e-214 750.4 961 48.8
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.2e-214 750.0 668 59.4
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-213 747.7 936 48.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.4e-213 747.3 952 48.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 2.4e-213 746.5 656 60.4
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.4e-213 746.5 988 46.7
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.4e-213 745.3 655 58.9
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 4.5e-212 742.3 917 49.8
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.7e-211 740.3 934 49.1
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.5e-210 736.5 952 47.9
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 3.2e-210 736.1 891 48.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.2e-210 735.7 985 45.2
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.8e-206 723.0 660 57.7
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.4e-205 720.7 907 48.0
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.8e-205 720.3 916 48.3
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 9.2e-205 718.0 677 56.4
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 6.6e-203 711.8 944 46.7
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 8.6e-203 711.4 677 56.0
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.0e-200 704.5 734 53.8
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 6.8e-200 701.8 974 44.9
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.4e-199 699.5 877 45.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.1e-197 692.6 902 47.1
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.8e-192 677.2 924 45.1
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.6e-185 654.1 694 52.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 6.2e-185 652.1 689 50.8
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 8.3e-182 641.7 694 51.7
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 7.8e-180 635.2 734 49.2
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.4e-167 593.2 1025 39.4
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.3e-166 591.3 996 40.3
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.7e-155 554.3 707 44.6
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.9e-149 534.3 837 41.1
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.4e-141 508.1 858 40.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.9e-125 454.5 644 42.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 7.4e-122 442.6 700 43.0
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 4.0e-107 393.7 522 40.4
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.2e-98 365.5 288 60.1
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.0e-98 364.8 483 39.8
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.3e-94 352.1 834 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.3e-89 335.5 461 39.9
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.8e-35 155.6 116 63.8
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.4e-34 151.4 116 62.1
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.0e-30 139.8 383 28.2
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 4.5e-26 124.4 138 58.0
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 5.8e-26 124.0 138 58.0
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.0e-23 114.0 306 38.2
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.0e-22 113.2 175 41.7
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.3e-22 112.1 182 39.0
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-17 96.3 84 64.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.4e-16 92.8 102 53.9
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 6.1e-15 87.4 102 52.9
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 7.4e-13 80.5 67 70.1


User provided reference genes

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