Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 5.1e-210 734.2 376 100.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.5e-182 641.3 382 84.8
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.3e-181 639.8 379 85.2
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.7e-181 639.4 379 85.8
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.2e-181 639.0 379 85.8
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.4e-180 636.3 379 85.0
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 8.8e-178 627.1 380 83.2
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.3e-177 625.2 380 82.9
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 5.7e-177 624.4 380 82.9
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 9.7e-177 623.6 380 82.9
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 9.7e-177 623.6 380 82.9
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.7e-176 621.7 381 82.7
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 8.2e-176 620.5 380 82.4
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 4.0e-162 575.1 379 74.9
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.7e-141 506.5 380 65.5
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.6e-139 500.0 377 65.3
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 8.0e-139 497.7 379 65.4
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 6.8e-138 494.6 379 62.8
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 8.9e-138 494.2 379 63.1
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.2e-137 493.8 379 65.4
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.6e-137 492.7 375 65.1
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.6e-137 492.7 379 63.3
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 5.8e-137 491.5 379 62.5
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 5.8e-137 491.5 375 64.3
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 7.5e-137 491.1 376 64.1
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.7e-136 490.0 376 63.0
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.7e-136 488.8 380 64.2
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.9e-135 486.5 377 63.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 5.4e-135 485.0 377 63.7
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 9.2e-135 484.2 361 66.2
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.0e-134 483.0 376 63.3
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.7e-134 482.6 377 62.9
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 6.0e-134 481.5 379 62.0
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.3e-133 479.6 375 62.1
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.3e-133 479.6 375 62.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.0e-133 479.2 375 62.1
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 3.9e-133 478.8 376 63.8
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 5.0e-133 478.4 377 63.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 5.0e-133 478.4 379 61.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.6e-133 478.0 375 61.9
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.1e-132 477.2 377 62.1
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.1e-132 477.2 376 62.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.1e-132 477.2 376 63.0
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 1.9e-132 476.5 375 62.7
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.3e-132 475.7 377 61.8
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.3e-132 475.3 375 61.6
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.3e-132 475.3 375 61.6
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 1.6e-131 473.4 379 61.7
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 4.7e-131 471.9 375 62.4
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.4e-130 470.3 379 62.0
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 6.8e-130 468.0 379 60.2
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.5e-129 466.8 429 56.9
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.8e-129 464.9 385 59.7
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.9e-128 462.6 379 61.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 8.3e-128 461.1 379 60.2
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.4e-127 460.3 378 61.4
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.9e-127 459.9 376 60.4
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.9e-127 459.9 380 59.7
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 5.4e-127 458.4 378 60.8
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 9.2e-127 457.6 380 60.0
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.1e-126 456.4 381 59.8
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 2.1e-126 456.4 377 61.3
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 4.6e-126 455.3 381 59.3
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 8.6e-125 451.1 380 58.7
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.5e-124 450.3 379 59.1
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 2.5e-124 449.5 380 57.6
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 9.5e-124 447.6 379 58.8
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.8e-123 446.0 378 57.9
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 6.2e-123 444.9 377 59.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.1e-123 444.5 376 58.8
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.4e-121 438.7 377 58.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 5.8e-121 438.3 377 58.9
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 9.9e-121 437.6 406 55.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.9e-120 435.3 377 58.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 8.4e-120 434.5 376 57.2
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 8.4e-120 434.5 378 57.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 4.1e-119 432.2 377 57.6
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 6.0e-118 428.3 375 57.6
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.3e-117 427.2 366 58.5
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.5e-116 423.7 377 55.4
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 6.2e-115 418.3 377 55.7
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.2e-113 414.1 378 55.0
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.5e-113 413.7 376 58.0
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 2.9e-112 409.5 400 53.8
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.9e-112 408.7 424 50.2
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 4.2e-111 405.6 374 55.6
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 5.4e-111 405.2 376 54.5
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 9.6e-108 394.4 376 54.0
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.8e-107 392.9 369 51.8
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 5.3e-106 388.7 379 53.8
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.4e-103 380.6 385 53.0
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 1.3e-101 374.0 314 58.6
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 7.1e-95 351.7 371 48.5
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 4.8e-91 339.0 377 45.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 5.3e-90 335.5 267 61.0
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.3e-80 304.3 268 57.5
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 3.2e-79 299.7 406 43.6
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 3.9e-77 292.7 274 54.4
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 5.1e-77 292.4 363 42.1
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.4e-71 274.2 365 40.0
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.1e-68 264.6 187 65.2
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.3e-68 262.7 223 63.2
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.3e-68 262.7 223 63.2
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.2e-65 254.6 261 52.9
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 5.3e-58 229.2 169 66.9
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.2e-55 219.9 124 83.9
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 4.7e-54 216.1 140 74.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 3.3e-52 209.9 376 39.6
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 8.5e-48 195.3 119 75.6
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.3e-43 181.4 135 66.7
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.4e-42 177.9 166 57.8
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 4.7e-38 162.9 121 62.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.9e-27 126.3 110 57.3
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 9.2e-26 122.1 110 56.4
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.5e-23 114.8 117 51.3
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 8.0e-22 109.0 351 25.1
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 8.9e-21 105.5 117 53.0
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 9.8e-12 75.5 112 42.9
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 4.9e-11 73.2 51 64.7
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.4e-10 71.6 83 50.6
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.4e-10 70.9 45 71.1
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 5.4e-10 69.7 51 58.8
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.6e-09 66.6 53 66.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.7e-08 64.7 45 64.4
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 3.0e-08 63.9 364 20.9
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.1e-08 63.2 52 55.8
unitig_747.g21455 Utricularia gibba HOM05D000883 ORTHO05D002942 1.1e-07 62.0 132 31.1
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.9e-07 61.2 46 58.7
TAR623G0958 Trochodendron aralioides HOM05D000883 ORTHO05D002942 1.9e-07 61.2 132 30.3
VMungo1383G2682 Vigna mungo HOM05D000177 ORTHO05D002752 3.3e-07 60.5 149 29.5
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 4.3e-07 60.1 93 43.0
Nitab4.5_0018389g0020 Nicotiana tabacum HOM05D001142 ORTHO05D004628 4.3e-07 60.1 404 23.3
Ciclev10028816m.g Citrus clementina HOM05D000883 ORTHO05D002942 7.3e-07 59.3 123 30.1
FAN17G2912 Fragaria x ananassa HOM05D001367 ORTHO05D002514 7.3e-07 59.3 125 30.4
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 9.5e-07 58.9 46 56.5
MSTRG.11069 Avicennia marina HOM05D001142 ORTHO05D004628 1.2e-06 58.5 378 23.0
FvH4_4g26870 Fragaria vesca HOM05D001367 ORTHO05D002514 1.2e-06 58.5 125 31.2
FAN22G1468 Fragaria x ananassa HOM05D001367 ORTHO05D002514 1.2e-06 58.5 125 30.4
Potri.006G091900 Populus trichocarpa HOM05D000177 ORTHO05D002752 1.2e-06 58.5 150 28.7
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 1.2e-06 58.5 132 28.8
FAN07G1967 Fragaria x ananassa HOM05D001367 ORTHO05D002514 1.6e-06 58.2 125 30.4
Glyma.07G139000 Glycine max HOM05D000177 ORTHO05D002752 1.6e-06 58.2 136 29.4
Manes.08G096000 Manihot esculenta HOM05D000883 ORTHO05D002942 1.6e-06 58.2 133 28.6
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 2.1e-06 57.8 127 28.3
Mapoly0002s0289 Marchantia polymorpha HOM05D000177 ORTHO05D003047 2.1e-06 57.8 125 29.6
RcHm_v2.0_Chr4g0434631 Rosa chinensis HOM05D001367 ORTHO05D002514 2.1e-06 57.8 125 30.4
CsaV3_5G008450 Cucumis sativus L. HOM05D000177 ORTHO05D002752 2.8e-06 57.4 137 29.2
ECA233G1684 Erigeron canadensis HOM05D000406 ORTHO05D007930 3.6e-06 57.0 119 31.1
FAN12G1244 Fragaria x ananassa HOM05D001367 ORTHO05D002514 3.6e-06 57.0 125 30.4
FAN12G3035 Fragaria x ananassa HOM05D001367 ORTHO05D002514 3.6e-06 57.0 125 30.4
Sp5g35870 Schrenkiella parvula HOM05D001142 ORTHO05D004628 3.6e-06 57.0 292 26.7
AagrBONN_evm.TU.Sc2ySwM_362.1936 Anthoceros agrestis HOM05D001142 ORTHO05D004628 4.7e-06 56.6 361 20.8
CiPaw.09G200400 Carya illinoinensis HOM05D000177 ORTHO05D002752 4.7e-06 56.6 137 29.2
FAN02G3356 Fragaria x ananassa HOM05D000177 ORTHO05D002752 4.7e-06 56.6 137 29.2
Actinidia34477 Actinidia chinensis HOM05D000883 ORTHO05D002942 6.2e-06 56.2 124 30.6
arahy.Tifrunner.gnm1.ann1.5D55UE Arachis hypogaea HOM05D001142 ORTHO05D004628 6.2e-06 56.2 357 20.7
arahy.Tifrunner.gnm1.ann1.5G9G3T Arachis hypogaea HOM05D001142 ORTHO05D004628 6.2e-06 56.2 357 20.7
CDE05G3542 Ceratophyllum demersum HOM05D001142 ORTHO05D004628 6.2e-06 56.2 276 22.8
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.2e-06 56.2 71 46.5
FvH4_3g39670 Fragaria vesca HOM05D000883 ORTHO05D002942 6.2e-06 56.2 123 27.6
FAN11G2457 Fragaria x ananassa HOM05D000883 ORTHO05D002942 6.2e-06 56.2 123 27.6
FAN16G0789 Fragaria x ananassa HOM05D000883 ORTHO05D002942 6.2e-06 56.2 123 27.6
Gorai.011G100500 Gossypium raimondii HOM05D001367 ORTHO05D005289 6.2e-06 56.2 367 22.9
Potri.016G103300 Populus trichocarpa HOM05D000177 ORTHO05D002752 6.2e-06 56.2 146 28.8
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 8.1e-06 55.8 270 27.0
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 8.1e-06 55.8 270 27.0
Lalb_Chr12g0209501 Lupinus albus HOM05D000177 ORTHO05D002752 8.1e-06 55.8 138 26.1
Potri.010G121500 Populus trichocarpa HOM05D001367 ORTHO05D002514 8.1e-06 55.8 134 30.6
unitig_61.g26315 Utricularia gibba HOM05D000406 ORTHO05D008572 8.1e-06 55.8 135 31.9


User provided reference genes

Program Settings