Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-281 972.6 670 100.0
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.3e-211 738.0 670 78.4
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.5e-135 487.6 688 56.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.6e-135 485.7 687 60.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.3e-131 474.6 686 58.7
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.2e-130 469.9 684 56.7
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.6e-124 448.7 702 58.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.1e-117 426.4 685 48.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.2e-107 394.0 692 58.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 7.2e-106 389.0 685 58.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.0e-103 380.9 686 55.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-102 378.3 692 56.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.8e-99 366.7 680 44.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 6.3e-78 296.2 680 53.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 9.2e-69 265.8 705 40.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-66 258.8 609 45.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.8e-64 251.5 713 39.4
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.7e-62 245.0 601 43.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.2e-62 244.6 737 36.1
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.4e-61 241.1 751 39.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 9.2e-61 239.2 723 38.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.0e-59 235.7 605 42.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.0e-59 235.7 745 36.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.7e-59 235.0 700 39.6
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.0e-59 234.2 725 35.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.1e-57 228.0 613 37.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.8e-57 227.6 603 42.6
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 4.7e-57 226.9 750 38.9
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 6.2e-57 226.5 721 42.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.1e-56 224.2 714 39.9
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.0e-56 223.8 697 38.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.5e-55 221.9 774 41.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.6e-55 221.1 762 37.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.2e-54 218.0 744 40.1
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 9.2e-53 212.6 607 39.7
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 9.2e-53 212.6 705 35.9
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.2e-53 212.6 705 35.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.2e-53 212.6 697 40.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-52 211.8 705 35.9
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-52 211.8 705 35.9
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.0e-52 211.5 698 38.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.0e-52 211.5 754 39.1
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.0e-52 211.5 789 36.2
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.5e-52 210.7 603 39.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.5e-52 210.7 720 37.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 6.0e-52 209.9 737 31.8
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.1e-50 205.7 737 32.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 4.3e-50 203.8 747 36.9
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 5.6e-50 203.4 782 35.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 7.3e-50 203.0 751 38.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.3e-50 203.0 724 38.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.6e-49 200.7 759 34.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 4.0e-48 197.2 668 35.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 9.8e-47 192.6 644 37.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.9e-46 191.0 660 41.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.7e-46 190.7 718 38.9
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.7e-46 190.7 711 34.6
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 8.3e-46 189.5 710 39.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.1e-45 189.1 700 42.3
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-45 189.1 691 34.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-45 189.1 721 38.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.4e-45 186.8 693 41.8
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-44 185.7 684 34.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.6e-44 185.3 712 40.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.1e-44 184.9 629 34.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.1e-44 184.9 716 37.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-44 184.5 741 33.3
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 2.7e-44 184.5 726 32.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.6e-44 183.7 742 33.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.6e-44 183.7 742 32.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 7.8e-44 183.0 717 33.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.7e-43 181.8 768 34.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 3.0e-43 181.0 652 37.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 6.6e-43 179.9 775 34.8
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.6e-43 179.9 775 35.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 4.3e-42 177.2 711 38.8
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 7.3e-42 176.4 649 32.8
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.5e-42 176.0 723 37.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.1e-41 174.9 734 38.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 3.6e-41 174.1 729 33.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 8.1e-41 172.9 712 33.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.3e-40 171.4 785 36.8
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 5.2e-40 170.2 650 39.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.8e-40 169.9 672 39.7
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.4e-39 167.5 722 35.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.3e-38 165.6 424 37.7
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.2e-38 164.9 754 30.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.9e-38 163.7 706 38.2
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.4e-37 162.2 646 33.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.4e-37 162.2 722 30.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.4e-37 161.4 731 30.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 4.1e-37 160.6 700 36.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.1e-37 160.6 703 38.8
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.7e-36 157.9 677 31.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.5e-36 157.5 651 34.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.0e-36 156.8 620 40.5
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.3e-35 154.8 439 49.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 6.6e-35 153.3 680 31.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.5e-34 152.1 717 38.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.5e-34 151.4 683 33.2
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.3e-34 149.8 711 32.8
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.2e-33 149.1 670 35.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.6e-33 148.7 677 37.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.1e-33 148.3 710 33.8
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 6.2e-33 146.7 439 36.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.1e-32 144.4 639 34.6
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.0e-32 144.1 301 39.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 5.2e-32 143.7 635 37.2
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 5.2e-32 143.7 638 29.2
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-31 142.1 603 31.0
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.0e-31 141.7 745 29.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.6e-31 141.4 716 37.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.3e-30 139.0 712 27.9
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.8e-30 137.5 297 39.1
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 4.9e-30 137.1 614 32.1
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 4.6e-28 130.6 165 61.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 3.9e-27 127.5 524 34.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.5e-26 125.6 673 27.6
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 7.3e-26 123.2 608 31.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.3e-25 122.5 598 28.1
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.3e-25 122.5 767 30.5
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.6e-25 122.1 611 36.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.4e-24 119.0 426 43.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.4e-24 118.2 390 47.9
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.4e-24 118.2 691 28.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.0e-24 117.5 670 31.5
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.0e-23 115.2 791 31.9
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 2.0e-23 115.2 661 27.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-22 111.3 605 33.9
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.9e-22 111.3 605 33.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-21 108.6 743 27.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-21 108.2 420 31.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.4e-21 108.2 602 33.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-20 105.5 699 27.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.1e-20 105.1 686 29.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.7e-20 104.8 519 39.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 6.0e-20 103.6 687 31.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.3e-19 102.4 247 40.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.8e-19 102.1 622 27.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.0e-19 101.3 772 26.9
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.9e-19 100.9 689 28.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.7e-19 100.1 696 29.2
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.3e-17 95.9 60 83.3
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.8e-16 92.0 558 27.6
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.2e-15 89.4 294 34.4
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.5e-15 89.0 214 37.4
Aa31LG1G18510 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.0e-15 88.6 65 80.0
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.5e-15 87.4 693 26.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 7.6e-15 86.7 672 27.8
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 7.6e-15 86.7 561 26.6
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.7e-14 85.5 460 32.0
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.1e-13 80.1 127 46.5
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-11 75.5 321 32.7
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-10 72.4 295 31.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 4.3e-10 70.9 82 57.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.8e-09 67.4 392 36.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.8e-09 67.4 148 42.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.1e-08 66.2 492 34.8
Aa31LG1G18500 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-07 62.4 34 88.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-07 62.4 185 36.2
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.4e-07 61.2 75 53.3
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 5.8e-07 60.5 91 46.2
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 7.6e-07 60.1 66 59.1
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 7.6e-07 60.1 66 59.1
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 7.6e-07 60.1 66 59.1
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 7.6e-07 60.1 66 59.1
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.6e-07 60.1 152 36.8
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 1.0e-06 59.7 66 59.1
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 1.0e-06 59.7 66 59.1
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.7e-06 58.9 105 45.7
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-06 58.5 77 54.5
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 3.8e-06 57.8 91 45.1


User provided reference genes

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