Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 5.6e-300 1033.5 521 100.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 6.8e-229 797.3 523 79.5
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.6e-228 795.4 527 78.4
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 6.4e-227 790.8 520 78.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 8.3e-227 790.4 527 78.2
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.2e-226 788.5 527 78.7
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-226 787.7 524 78.2
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.3e-224 782.3 526 77.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.5e-223 779.6 520 78.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.9e-223 779.2 527 77.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-223 778.5 527 76.9
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-222 775.8 530 76.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.8e-222 775.4 527 77.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.6e-222 775.0 530 76.0
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.6e-222 775.0 530 76.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.4e-221 773.1 527 77.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-220 769.6 525 76.6
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.8e-220 766.9 527 76.5
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.8e-220 766.9 518 77.6
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-219 766.5 526 75.7
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-219 766.5 526 76.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 6.4e-219 764.2 526 75.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 8.3e-219 763.8 543 74.4
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-218 761.1 527 76.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.2e-218 760.4 519 77.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-216 756.5 525 75.8
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 8.9e-213 743.8 520 76.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.0e-208 730.3 525 73.1
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 6.0e-201 704.5 519 70.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 8.7e-200 700.7 525 69.7
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.9e-196 687.2 530 68.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-195 686.4 521 68.9
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.7e-195 686.4 521 68.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.2e-195 686.0 515 69.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.9e-195 685.6 518 68.7
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.4e-195 684.5 513 70.0
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.4e-194 683.3 514 69.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.2e-194 682.2 521 68.9
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.2e-194 681.8 519 68.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 9.3e-194 680.6 530 67.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.6e-193 679.9 523 68.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.1e-193 679.5 519 68.2
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.1e-193 679.5 522 68.4
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 7.8e-193 677.6 520 68.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.0e-192 677.2 522 67.8
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-192 676.4 510 68.8
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 6.6e-192 674.5 516 68.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 8.7e-192 674.1 526 68.1
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-191 672.9 516 68.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.3e-191 672.2 516 67.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.3e-191 672.2 508 68.9
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.3e-191 671.8 522 68.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.3e-191 671.8 521 68.3
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.3e-191 671.8 519 67.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.6e-191 671.4 532 67.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-190 670.2 516 68.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.3e-190 670.2 524 67.4
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.1e-190 669.5 523 66.2
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.1e-190 669.5 524 67.2
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.6e-190 668.7 518 66.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 6.2e-190 667.9 522 67.4
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 4.0e-189 665.2 526 66.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 6.9e-189 664.5 522 67.0
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.2e-188 663.7 519 66.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.5e-188 663.3 516 67.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 4.5e-188 661.8 516 67.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.5e-188 661.8 519 67.4
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-187 660.2 519 67.2
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.9e-187 659.1 527 65.5
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.9e-187 659.1 524 65.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 8.4e-187 657.5 507 67.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-186 657.1 515 66.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-186 656.8 519 67.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.9e-186 656.4 541 64.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 7.1e-186 654.4 522 66.7
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.2e-185 653.7 529 65.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-185 652.9 522 65.9
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.5e-185 652.1 520 65.6
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 6.0e-185 651.4 529 64.7
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 6.0e-185 651.4 529 64.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.3e-184 650.2 524 65.6
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-184 649.4 533 64.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.3e-184 649.4 508 66.9
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.0e-184 649.0 510 66.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.7e-184 647.9 516 66.1
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.6e-183 644.8 550 63.1
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.6e-182 643.3 520 64.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 9.9e-180 634.0 530 63.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.9e-179 631.7 515 64.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.9e-179 631.7 515 64.3
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.9e-178 629.8 511 64.4
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.7e-177 625.9 566 60.6
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.0e-177 624.8 518 63.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.8e-176 623.2 520 61.9
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.1e-175 620.5 505 64.4
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-173 613.6 524 63.2
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.5e-172 610.1 525 61.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 4.5e-172 608.6 516 62.2
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.7e-171 606.7 516 60.7
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.7e-171 606.7 514 62.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.5e-170 602.8 523 62.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 7.1e-170 601.3 517 63.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.2e-169 600.5 517 61.7
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.7e-169 599.4 522 62.3
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 7.9e-169 597.8 487 64.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.9e-168 595.5 519 59.3
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 5.1e-168 595.1 519 61.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.9e-167 593.2 585 57.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 7.4e-167 591.3 522 59.4
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-165 587.4 542 58.7
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 3.1e-165 585.9 513 60.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.7e-163 580.1 515 59.8
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 6.5e-163 578.2 522 60.2
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.1e-162 577.4 611 53.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 5.5e-162 575.1 515 59.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.9e-161 571.2 534 60.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 7.4e-159 564.7 518 57.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.7e-158 562.4 524 59.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.8e-157 560.1 512 58.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 5.3e-157 558.5 536 54.9
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.9e-156 555.1 524 58.4
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.9e-156 555.1 496 59.7
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.8e-150 536.2 525 56.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 4.5e-148 528.9 381 73.5
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.2e-147 526.6 429 64.8
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.0e-144 516.2 532 56.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 4.1e-141 505.8 562 50.2
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.5e-140 502.7 317 80.4
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.2e-139 500.0 495 54.1
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 8.8e-136 488.0 525 51.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.4e-133 480.7 405 65.2
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.6e-129 467.2 385 64.9
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 8.8e-128 461.5 385 64.2
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.6e-127 459.9 430 59.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.8e-126 455.7 421 60.3
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.5e-124 449.5 577 47.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 5.9e-124 448.7 430 58.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-122 443.7 371 65.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-119 434.5 332 68.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.0e-111 407.1 381 59.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.0e-109 398.7 313 67.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.5e-106 390.2 496 46.2
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-100 370.5 432 51.4
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-93 346.7 309 61.8
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.3e-91 340.5 303 61.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-76 291.6 187 76.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 8.7e-67 258.8 261 56.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 5.6e-66 256.1 495 35.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-65 255.0 168 74.4
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.4e-63 246.9 258 57.4
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.4e-63 246.9 140 88.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.3e-59 235.0 218 56.9
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.6e-52 211.5 134 75.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.7e-52 210.7 217 56.2
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 3.5e-52 210.3 245 50.2
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 8.7e-51 205.7 126 78.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.9e-50 204.5 335 40.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 6.5e-46 189.5 132 70.5
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-36 158.3 126 66.7
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-36 158.3 255 43.9
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.9e-36 156.0 93 77.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.9e-36 156.0 93 77.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.1e-34 152.1 101 71.3
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.8e-33 147.5 143 54.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-30 137.9 220 41.4
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.4e-29 132.5 101 65.3
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.7e-22 111.7 65 81.5
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.2e-22 111.3 66 80.3
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 5.0e-22 110.2 63 82.5
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.5e-22 109.4 73 69.9
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-20 105.1 75 70.7
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.1e-20 104.8 67 74.6
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 6.1e-20 103.2 103 57.3
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.4e-19 102.1 65 75.4
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.2e-19 100.1 65 81.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-18 99.0 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.4e-18 97.4 65 70.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.1e-16 89.4 77 61.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.7e-14 85.1 55 76.4
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.8e-11 75.1 48 62.5
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.9e-07 60.1 48 75.0
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 1.7e-06 58.5 37 73.0
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 5.0e-06 57.0 36 72.2
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 5.0e-06 57.0 36 72.2


User provided reference genes

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