Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G1750 Aethionema arabicum HOM05D000240 ORTHO05D021170 5.4e-57 224.2 118 100.0
Aa31LG9G1720 Aethionema arabicum HOM05D000240 ORTHO05D021170 2.3e-39 165.6 116 81.0
Carub.0003s0934 Capsella rubella HOM05D000240 ORTHO05D002608 3.2e-17 92.0 70 74.3
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 3.2e-17 92.0 70 74.3
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 5.4e-17 91.3 70 72.9
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 7.1e-17 90.9 70 72.9
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 7.1e-17 90.9 70 72.9
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 1.2e-16 90.1 70 72.9
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 1.2e-16 90.1 70 72.9
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.2e-16 90.1 70 72.9
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 2.7e-16 89.0 69 73.9
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.7e-16 89.0 70 71.4
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 6.0e-16 87.8 69 72.5
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 1.0e-15 87.0 69 69.6
Ciclev10006521m.g Citrus clementina HOM05D000240 ORTHO05D002608 3.9e-15 85.1 72 68.1
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 6.7e-15 84.3 68 69.1
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 3.3e-14 82.0 64 73.4
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 4.3e-14 81.6 68 69.1
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 9.6e-14 80.5 68 67.6
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 9.6e-14 80.5 68 67.6
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 9.6e-14 80.5 72 65.3
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 9.6e-14 80.5 76 63.2
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 1.3e-13 80.1 68 67.6
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 2.1e-13 79.3 64 70.3
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 2.1e-13 79.3 72 65.3
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 2.8e-13 79.0 68 67.6
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.8e-13 79.0 64 70.3
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 2.8e-13 79.0 102 53.9
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 2.8e-13 79.0 64 70.3
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 4.8e-13 78.2 64 68.8
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 4.8e-13 78.2 64 68.8
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 4.8e-13 78.2 64 68.8
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 4.8e-13 78.2 71 64.8
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 6.2e-13 77.8 71 66.2
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 6.2e-13 77.8 68 64.7
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 6.2e-13 77.8 64 68.8
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 8.1e-13 77.4 64 70.3
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 1.1e-12 77.0 72 59.7
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 1.1e-12 77.0 64 68.8
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 1.1e-12 77.0 72 62.5
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 1.8e-12 76.3 76 63.2
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 1.8e-12 76.3 68 66.2
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.8e-12 76.3 64 67.2
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 1.8e-12 76.3 72 59.7
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.8e-12 76.3 68 66.2
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 2.4e-12 75.9 68 61.8
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 2.4e-12 75.9 64 67.2
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 3.1e-12 75.5 74 63.5
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 3.1e-12 75.5 64 67.2
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 4.0e-12 75.1 64 70.3
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 4.0e-12 75.1 72 58.3
Ca_12040_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 4.0e-12 75.1 64 67.2
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 4.0e-12 75.1 68 64.7
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 5.3e-12 74.7 76 61.8
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 6.9e-12 74.3 64 64.1
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 6.9e-12 74.3 64 67.2
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 9.0e-12 73.9 70 64.3
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.2e-11 73.6 64 65.6
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 1.2e-11 73.6 65 64.6
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 1.5e-11 73.2 74 60.8
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.5e-11 73.2 64 65.6
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 2.6e-11 72.4 64 64.1
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 3.4e-11 72.0 64 64.1
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 5.8e-11 71.2 74 60.8
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 9.9e-11 70.5 70 61.4
MBI14_g09096_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 1.3e-10 70.1 58 69.0
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 2.9e-10 68.9 55 70.9
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 8.4e-10 67.4 58 69.0
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 8.4e-10 67.4 58 69.0
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 1.4e-09 66.6 64 62.5
Zm00001eb313020 Zea mays HOM05D000240 ORTHO05D002608 1.4e-09 66.6 65 58.5
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 5.5e-09 64.7 64 62.5
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 7.1e-09 64.3 74 56.8
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 9.3e-09 63.9 65 56.9
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 1.2e-08 63.5 72 54.2
Cpa.g.sc5.185 Carica papaya HOM05D000240 ORTHO05D002608 1.2e-08 63.5 68 57.4
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 1.2e-08 63.5 71 54.9
SGA_v2.0_scaffold57G20198 Striga asiatica HOM05D000240 ORTHO05D002608 1.6e-08 63.2 64 59.4
FvH4_2g14360 Fragaria vesca HOM05D000240 ORTHO05D021170 2.7e-08 62.4 63 63.5
SEGI_08432 Sequoiadendron giganteum HOM05D000240 ORTHO05D002608 2.7e-08 62.4 72 50.0
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 1.0e-07 60.5 64 59.4
FAN24G1086 Fragaria x ananassa HOM05D000240 ORTHO05D021170 1.0e-07 60.5 68 58.8
FAN01G2386 Fragaria x ananassa HOM05D005545 ORTHO05D006917 1.8e-07 59.7 64 57.8
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-07 59.7 64 57.8
FAN28G1742 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-07 59.7 64 57.8
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-07 59.7 64 57.8
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.8e-07 59.7 65 58.5
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 1.8e-07 59.7 64 57.8
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 1.8e-07 59.7 64 57.8
Migut.C00475 Erythranthe guttata HOM05D000240 ORTHO05D002608 5.1e-07 58.2 75 44.0
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 5.1e-07 58.2 72 52.8
CSS0016409 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.1e-06 57.0 70 42.9
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 1.1e-06 57.0 58 58.6
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 1.5e-06 56.6 64 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1410 Anthoceros agrestis HOM05D000240 ORTHO05D002608 1.5e-06 56.6 70 44.3
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 1.5e-06 56.6 68 52.9
Dinv44933 Davidia involucrata HOM05D000240 ORTHO05D002608 1.5e-06 56.6 92 35.9
Mapoly0034s0119 Marchantia polymorpha HOM05D000240 ORTHO05D002608 1.9e-06 56.2 65 49.2
Haze_20206 Corylus avellana HOM05D000309 ORTHO05D021170 2.5e-06 55.8 48 70.8
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 3.3e-06 55.5 69 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3512 Anthoceros agrestis HOM05D000240 ORTHO05D002608 4.3e-06 55.1 57 57.9
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 4.3e-06 55.1 75 48.0
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 7.4e-06 54.3 64 53.1
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.4e-06 54.3 64 53.1
Nn6g34521 Nelumbo nucifera HOM05D000240 ORTHO05D002608 7.4e-06 54.3 63 47.6
SEGI_10690 Sequoiadendron giganteum HOM05D000240 ORTHO05D002608 7.4e-06 54.3 60 48.3
GSVIVG01009305001 Vitis vinifera HOM05D000240 ORTHO05D002608 7.4e-06 54.3 62 48.4


User provided reference genes

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