Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 5.3e-66 254.2 128 100.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 4.6e-62 241.1 128 92.2
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.8e-61 239.2 128 90.6
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.3e-61 238.8 128 93.0
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 2.5e-60 235.3 128 90.6
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 4.3e-60 234.6 127 89.0
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 4.3e-60 234.6 127 89.0
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 4.3e-60 234.6 127 89.0
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 9.6e-60 233.4 128 89.1
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.8e-59 231.9 128 87.5
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 8.4e-56 220.3 121 87.6
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 8.4e-56 220.3 121 87.6
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 9.3e-55 216.9 127 81.9
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 9.3e-55 216.9 128 80.5
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 9.3e-55 216.9 127 82.7
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 81.1
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 4.6e-54 214.5 127 81.1
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 6.0e-54 214.2 127 81.9
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 79.5
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 81.1
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 81.1
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 81.1
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 81.1
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.3e-53 213.0 127 79.5
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 79.5
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 79.5
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.8e-53 212.6 124 82.3
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.1
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 80.3
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 5.1e-53 211.1 127 79.5
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 5.1e-53 211.1 127 79.5
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 6.7e-53 210.7 127 80.3
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.1e-52 209.9 127 78.7
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.1e-52 209.9 127 78.0
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.9e-52 209.1 127 78.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.9e-52 209.1 127 79.5
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 79.5
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.3e-52 208.4 127 78.0
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 4.3e-52 208.0 128 78.9
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 4.3e-52 208.0 127 77.2
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 4.3e-52 208.0 127 77.2
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 5.7e-52 207.6 127 78.0
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 5.7e-52 207.6 127 78.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 77.2
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 78.0
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 78.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 7.4e-52 207.2 128 77.3
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 77.2
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 9.6e-52 206.8 127 78.7
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 78.0
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 78.0
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 78.0
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 2.1e-51 205.7 127 78.0
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 77.2
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 4.8e-51 204.5 126 77.8
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 4.8e-51 204.5 127 78.0
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 4.8e-51 204.5 127 77.2
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 6.2e-51 204.1 127 77.2
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 6.2e-51 204.1 127 77.2
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 6.2e-51 204.1 120 82.5
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 6.2e-51 204.1 128 78.1
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 75.6
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 76.4
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 76.4
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.8e-50 202.6 121 80.2
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 2.4e-50 202.2 127 75.6
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 79.0
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 4.1e-50 201.4 123 74.8
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 82.4
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 5.3e-50 201.1 127 75.6
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 5.3e-50 201.1 127 77.2
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 9.0e-50 200.3 127 76.4
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.5e-49 199.5 119 80.7
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 79.0
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.4e-49 198.4 117 80.3
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 3.4e-49 198.4 127 75.6
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 4.5e-49 198.0 127 74.8
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 4.5e-49 198.0 127 75.6
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 5.8e-49 197.6 119 79.0
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 5.8e-49 197.6 119 79.0
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 7.6e-49 197.2 127 71.7
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 7.6e-49 197.2 119 80.7
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 76.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 2.2e-48 195.7 119 77.3
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 2.9e-48 195.3 122 77.0
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 79.8
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 77.3
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 5.0e-48 194.5 127 74.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 6.5e-48 194.1 119 77.3
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 6.5e-48 194.1 119 79.8
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 6.5e-48 194.1 127 71.7
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 79.0
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 76.5
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.5e-47 191.0 119 77.3
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 5.5e-47 191.0 127 71.7
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 9.3e-47 190.3 119 74.8
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 9.3e-47 190.3 119 77.3
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 77.3
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.1e-46 189.1 119 73.1
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 75.6
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.8e-45 186.0 144 64.6
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 2.3e-45 185.7 127 68.5
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.5e-44 183.0 127 67.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.5e-44 182.2 117 72.6
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 4.3e-44 181.4 119 71.4
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.8e-43 178.7 126 69.0
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 3.7e-43 178.3 127 68.5
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 3.7e-43 178.3 119 70.6
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.8e-42 176.0 122 70.5
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 5.9e-41 171.0 119 67.2
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 7.7e-41 170.6 105 77.1
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.8e-40 168.3 103 80.6
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.8e-40 168.3 122 66.4
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.0e-40 167.9 105 78.1
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-39 166.4 130 64.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.2e-38 163.3 133 65.4
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.2e-38 163.3 130 64.6
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.6e-38 162.9 121 66.1
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 9.7e-36 153.7 97 75.3
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-35 153.3 94 80.9
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 6.3e-35 151.0 95 78.9
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 1.1e-34 150.2 129 58.1
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.4e-34 149.8 93 79.6
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.8e-34 149.4 94 78.7
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.0e-32 143.7 141 52.5
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 5.0e-32 141.4 113 56.6
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 7.9e-30 134.0 139 51.8
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.0e-29 133.7 100 68.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.2e-27 125.9 85 69.4
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 3.7e-27 125.2 113 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 6.3e-27 124.4 99 54.5
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.8e-26 122.9 92 67.4
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.7e-14 81.6 51 74.5
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.0e-09 66.2 39 74.4
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.2e-07 58.5 39 71.8
Sed0016125 Sechium edule HOM05D005344 ORTHO05D006444 8.0e-06 54.3 35 68.6


User provided reference genes

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