Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.9e-159 565.8 304 100.0
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 3.1e-149 531.9 304 93.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.1e-149 531.6 304 92.4
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.6e-145 519.6 304 91.8
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.1e-141 505.4 304 86.8
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 5.3e-141 504.6 315 86.3
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 6.5e-139 497.7 306 88.2
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 6.5e-139 497.7 308 87.3
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.1e-138 496.9 310 86.8
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.1e-138 496.9 304 88.2
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.4e-138 496.5 309 86.7
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.2e-138 495.4 304 88.2
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 5.5e-138 494.6 308 86.0
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.6e-135 485.7 304 86.5
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 7.0e-133 477.6 305 82.6
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 5.5e-130 468.0 305 81.6
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.6e-129 466.5 305 81.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.1e-129 466.1 305 80.7
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.6e-127 459.1 306 80.4
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.4e-125 452.6 306 79.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 5.9e-124 448.0 299 79.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 5.9e-124 448.0 305 77.7
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 7.7e-124 447.6 305 77.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.0e-123 447.2 305 77.4
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.0e-123 447.2 304 78.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.7e-123 446.4 304 78.0
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 6.5e-123 444.5 305 77.4
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 8.5e-123 444.1 305 77.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 8.5e-123 444.1 302 78.5
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.5e-122 442.6 301 80.1
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 2.5e-122 442.6 305 77.7
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 7.2e-122 441.0 300 79.7
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 9.4e-122 440.7 296 79.1
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.4e-122 440.7 301 76.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 9.4e-122 440.7 301 77.1
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 77.3
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 77.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.7e-121 439.1 305 77.0
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 4.7e-121 438.3 291 80.4
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.0e-120 437.2 301 76.4
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.8e-120 436.4 298 78.9
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.8e-120 434.5 301 77.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.0e-119 433.0 306 75.8
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 8.3e-118 427.6 299 74.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.4e-117 426.8 305 74.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.8e-117 426.4 306 75.5
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 3.1e-117 425.6 296 78.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 296 76.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.7e-116 422.5 306 75.2
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 2.7e-116 422.5 293 75.8
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.9e-116 421.4 305 74.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.9e-116 421.4 305 74.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.5e-115 417.5 305 75.1
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.1e-114 417.2 293 76.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.1e-114 417.2 305 74.8
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.5e-114 416.8 292 78.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.9e-114 416.4 305 73.8
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.9e-114 416.4 305 73.8
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.9e-114 416.4 296 75.0
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 5.5e-114 414.8 296 76.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.2e-114 414.5 298 74.2
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.4e-114 414.1 305 73.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 9.4e-114 414.1 296 76.7
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 3.6e-113 412.1 301 72.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.8e-112 409.8 305 74.1
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 4.0e-112 408.7 304 74.7
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.8e-112 407.5 292 76.7
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.0e-111 406.4 293 75.1
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.6e-111 406.0 297 74.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.4e-111 405.6 293 75.1
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 9.8e-111 404.1 305 71.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.3e-110 401.4 305 71.8
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.1e-109 400.6 305 70.2
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.1e-109 400.6 305 71.1
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.4e-109 399.4 282 75.5
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 5.4e-109 398.3 305 70.5
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.0e-109 397.9 305 69.5
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 9.1e-109 397.5 296 72.6
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 9.1e-109 397.5 305 69.8
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.0e-108 396.4 305 70.2
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.5e-108 395.6 305 69.5
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.5e-108 395.6 305 69.5
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 5.9e-108 394.8 296 71.3
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 7.7e-108 394.4 305 69.5
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.0e-107 394.0 305 70.2
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.9e-106 389.8 305 68.9
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 7.2e-106 387.9 305 67.5
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 7.2e-106 387.9 305 67.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.8e-104 381.3 282 75.5
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 8.9e-104 380.9 297 69.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.2e-103 380.6 282 72.7
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 5.7e-103 378.3 299 69.9
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.3e-102 377.1 305 68.2
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.8e-102 375.9 292 70.2
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.6e-100 370.2 296 68.9
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 3.5e-100 369.0 305 64.6
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 3.9e-99 365.5 301 64.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.0e-99 365.2 282 73.0
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.5e-98 363.6 291 67.0
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.3e-98 362.5 307 63.5
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.4e-95 352.4 298 63.4
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.2e-94 349.7 291 64.6
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 3.7e-94 349.0 292 63.7
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.4e-93 346.3 274 70.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 9.5e-90 334.3 277 68.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.3e-86 323.9 282 62.4
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 4.1e-85 318.9 231 76.2
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.2e-79 300.8 304 54.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.7e-78 297.0 195 79.5
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.1e-73 280.0 296 56.1
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.8e-71 271.9 194 77.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.8e-70 269.2 301 51.2
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.4e-63 245.7 164 79.9
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.7e-62 243.8 159 79.9
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.6e-60 235.7 291 49.5
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 2.5e-58 229.9 339 45.1
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.6e-57 226.1 196 63.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.4e-56 224.2 199 62.3
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.6e-55 218.4 139 78.4
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.3e-54 217.6 297 46.1
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 5.6e-50 202.2 254 53.1
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 6.2e-49 198.7 110 93.6
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 3.5e-44 183.0 143 71.3
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 3.0e-43 179.9 115 82.6
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 9.6e-42 174.9 186 54.8
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.4e-37 161.0 212 46.7
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.4e-32 144.4 182 41.8
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.0e-31 140.6 97 78.4
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 7.7e-31 138.7 86 86.0
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.1e-29 134.8 99 69.7
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.4e-29 131.7 172 48.8
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 6.9e-24 115.5 60 91.7
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 2.7e-20 103.6 303 30.4
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 7.9e-20 102.1 283 30.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.1e-16 89.7 150 40.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 2.0e-15 87.4 85 61.2
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.9e-15 85.9 172 36.6
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.5e-13 81.3 54 68.5
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 2.7e-12 77.0 45 77.8
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 4.0e-11 73.2 195 32.8


User provided reference genes

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