Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2738.8 1420 100.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2517.7 1432 91.1
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2510.7 1431 91.2
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2502.2 1431 90.1
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2491.5 1431 89.9
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2485.7 1431 89.6
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2483.4 1431 89.7
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2479.9 1432 89.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2479.1 1432 89.6
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2466.4 1441 89.0
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2453.7 1392 91.7
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2357.8 1424 84.2
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2264.6 1418 80.2
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2259.6 1416 80.2
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2258.4 1418 80.5
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2254.2 1419 79.7
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2250.3 1419 79.8
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2244.9 1416 79.5
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2237.6 1429 78.7
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1418 79.7
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2232.6 1417 79.3
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2227.6 1417 79.5
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2226.1 1420 78.9
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2224.5 1420 78.9
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2218.4 1417 78.9
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2217.2 1418 78.7
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2214.5 1418 78.4
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2214.1 1420 78.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2213.0 1417 79.3
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2204.1 1418 78.4
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2203.3 1418 78.3
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2201.4 1419 78.2
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2199.1 1418 78.0
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2193.7 1416 77.2
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2191.8 1417 77.6
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2191.0 1348 81.2
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1417 78.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2186.8 1423 77.2
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2185.6 1417 78.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2181.8 1418 76.6
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2169.4 1422 76.5
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1417 76.3
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2161.0 1419 76.3
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2160.2 1419 76.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2159.0 1419 76.1
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2155.6 1419 77.3
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2153.3 1417 76.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2149.8 1420 76.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2148.6 1419 76.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1418 76.2
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1424 75.8
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1418 75.5
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2143.2 1433 76.6
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2140.9 1418 75.5
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2140.2 1509 72.7
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2137.8 1416 76.2
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2130.9 1418 75.7
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2128.6 1462 74.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2125.9 1422 75.7
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2124.7 1418 75.9
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2124.4 1429 75.1
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2122.8 1418 75.5
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2121.7 1416 75.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2117.8 1441 74.2
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2115.9 1430 74.2
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2112.4 1416 75.4
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2112.0 1410 76.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2102.0 1453 73.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2098.6 1415 74.3
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2075.4 1512 70.9
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2071.6 1417 73.4
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2068.1 1425 73.6
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2037.3 1283 79.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2032.7 1425 71.9
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2011.1 1245 80.3
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1976.8 1444 70.6
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1942.5 1730 61.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1933.7 1381 71.0
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1933.3 1324 74.0
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1926.0 1383 70.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1914.4 1380 70.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1870.5 1476 66.5
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1860.9 1213 76.4
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1858.2 1358 69.4
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1838.5 1406 66.1
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1825.8 1403 68.6
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1788.5 1406 64.5
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1769.2 1425 63.7
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1693.3 1560 58.7
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1546.6 841 93.6
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1426.0 823 89.1
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1410.6 1178 60.2
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1404.4 939 73.9
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1365.1 1386 50.9
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1340.9 985 69.6
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1328.9 1247 53.3
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1320.4 1380 49.1
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1314.7 1399 48.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1204.1 735 83.0
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1138.6 889 63.8
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1095.5 771 70.9
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.3e-308 1061.6 801 68.8
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 3.1e-284 982.6 608 81.4
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.7e-277 960.3 835 56.9
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.4e-236 824.3 610 69.7
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.0e-202 710.3 504 73.0
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 2.2e-197 694.1 534 72.1
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 7.9e-195 685.6 515 68.3
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.9e-185 654.4 561 61.5
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 4.0e-183 646.7 1519 29.3
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.8e-143 515.0 385 68.1
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 9.5e-132 476.1 538 48.9
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 6.2e-107 393.7 546 46.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 4.7e-99 367.5 271 68.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.9e-95 355.5 299 68.2
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.5e-89 335.9 217 75.1
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.6e-85 320.5 222 72.1
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 4.0e-74 284.6 425 41.4
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.1e-62 245.7 145 80.7
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.3e-53 216.5 133 76.7
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.2e-43 182.6 128 63.3
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 6.1e-38 164.5 89 88.8
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 2.6e-36 159.1 116 70.7
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 4.2e-31 141.7 112 61.6
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 9.4e-31 140.6 83 83.1
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.0e-30 137.5 152 47.4
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.8e-29 136.3 114 64.9
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 5.7e-28 131.3 138 51.4
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 4.8e-27 128.3 83 67.5
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.8e-26 126.3 154 50.6
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 3.1e-26 125.6 97 64.9
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 6.5e-24 117.9 239 36.4
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 5.5e-23 114.8 88 64.8
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 2.1e-22 112.8 165 41.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.2e-21 108.2 140 48.6
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.6e-20 105.9 98 52.0
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.4e-20 105.5 68 80.9
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.0e-17 96.3 53 88.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.0e-17 96.3 177 39.5
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.6e-16 90.9 50 92.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.4e-13 83.6 86 53.5
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.2e-12 80.5 89 44.9
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 3.4e-12 79.0 100 43.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-11 77.0 45 82.2
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.9e-11 75.1 50 66.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.9e-11 75.1 50 66.0
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.1e-10 73.9 42 85.7
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 1.0e-08 67.4 45 77.8
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.2e-06 60.5 48 68.8
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.6e-06 60.1 54 53.7


User provided reference genes

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