Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.6e-105 384.0 193 100.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.4e-70 269.2 196 73.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 5.3e-70 268.1 196 73.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.2e-69 266.9 196 71.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.0e-69 266.2 198 71.2
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.2e-67 258.8 196 69.9
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.3e-65 252.7 199 66.3
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.6e-64 249.2 202 69.3
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.7e-64 248.1 204 65.2
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 5.7e-64 248.1 204 67.2
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-63 246.5 199 65.3
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.2e-63 246.1 203 66.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.2e-61 240.4 201 67.2
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 7.7e-61 237.7 200 67.0
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 7.7e-61 237.7 200 67.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-60 236.9 198 66.2
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-60 236.9 198 66.2
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.3e-60 236.9 198 66.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.9e-60 235.7 202 62.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-59 233.4 198 66.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.5e-59 233.4 198 66.7
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.5e-59 233.4 203 63.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 9.4e-59 230.7 198 66.2
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-58 229.6 198 64.6
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.7e-58 229.2 199 65.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.7e-58 229.2 199 65.3
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 6.3e-55 218.0 201 57.7
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.1e-54 214.2 203 56.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.1e-54 214.2 203 57.1
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.2e-53 213.8 198 56.1
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.6e-53 212.6 203 57.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.5e-51 204.9 202 55.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 7.2e-51 204.5 196 55.1
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 9.4e-51 204.1 202 55.9
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.6e-50 202.2 199 53.8
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 6.1e-50 201.4 205 56.6
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.0e-50 201.1 202 55.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.4e-49 200.3 200 53.0
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.4e-49 200.3 203 54.2
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.3e-49 199.5 199 55.8
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.0e-49 199.1 200 55.0
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.0e-49 199.1 202 54.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 4.0e-49 198.7 209 52.2
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.2e-49 198.4 199 55.3
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 8.8e-49 197.6 204 54.4
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.2e-48 197.2 209 54.1
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.2e-48 197.2 199 55.3
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.2e-48 197.2 193 56.5
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.5e-48 196.8 202 54.5
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-48 195.7 200 54.5
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.4e-48 195.3 205 50.2
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.4e-48 195.3 201 52.2
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-47 193.4 199 53.3
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.7e-47 193.4 202 53.0
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.7e-47 193.4 200 55.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 2.2e-47 193.0 204 50.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.7e-47 192.2 200 54.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.3e-47 191.4 208 51.4
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.4e-46 189.5 199 51.3
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 7.0e-46 188.0 202 51.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.2e-45 187.2 201 50.2
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.6e-45 186.8 204 52.0
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 3.5e-45 185.7 215 50.7
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.5e-45 185.3 199 52.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.5e-45 185.3 199 52.3
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 5.9e-45 184.9 199 53.8
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.0e-44 184.1 196 51.0
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-44 183.3 202 50.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-44 183.3 202 50.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.2e-44 183.0 193 49.7
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 5.0e-44 181.8 202 50.0
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 6.5e-44 181.4 204 53.9
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-43 180.6 195 53.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.1e-43 180.6 195 52.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.5e-43 180.3 203 48.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.5e-43 180.3 207 51.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 3.2e-43 179.1 199 50.8
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 3.2e-43 179.1 199 50.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.2e-43 179.1 185 52.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.5e-43 178.3 201 50.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 5.5e-43 178.3 195 51.8
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 9.4e-43 177.6 201 50.7
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.2e-42 177.2 205 48.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.2e-42 177.2 205 48.8
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.6e-42 176.8 191 50.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.6e-42 175.6 203 48.3
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.6e-42 175.6 203 47.3
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.7e-42 175.3 205 48.3
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.7e-42 175.3 204 49.0
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 8.0e-42 174.5 198 50.0
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.4e-41 173.7 196 51.5
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.8e-41 173.3 200 51.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.8e-41 173.3 200 51.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.3e-41 172.9 206 50.5
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 5.2e-41 171.8 200 48.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.2e-40 170.6 199 49.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.2e-40 170.6 193 50.3
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-40 170.2 196 51.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.0e-40 169.9 200 49.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.0e-40 169.9 205 49.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.6e-40 169.5 217 46.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.6e-40 169.5 192 49.5
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 9.8e-40 167.5 215 47.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.7e-39 166.8 196 50.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.7e-39 166.8 197 45.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.2e-39 166.4 199 48.2
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.8e-39 166.0 202 48.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.7e-39 165.6 205 47.8
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 4.9e-39 165.2 191 46.6
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 6.3e-39 164.9 193 46.6
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.3e-39 164.9 206 45.6
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 8.3e-39 164.5 199 47.7
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.4e-38 163.7 273 38.8
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.8e-38 163.3 212 47.2
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 3.1e-38 162.5 200 46.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 4.1e-38 162.2 205 48.8
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 5.4e-38 161.8 205 48.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 9.1e-38 161.0 154 58.4
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.2e-37 160.6 191 48.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.2e-37 160.6 204 49.5
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 4.5e-37 158.7 207 44.9
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.9e-37 158.3 199 46.7
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.9e-36 156.0 194 47.4
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.6e-36 154.5 198 46.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 3.3e-35 152.5 195 45.1
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.3e-35 152.5 204 43.1
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 3.3e-35 152.5 204 45.6
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.5e-35 151.0 199 45.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.6e-34 150.2 258 39.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.8e-34 149.4 151 54.3
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.3e-33 146.4 199 46.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 8.9e-33 144.4 106 69.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.0e-32 143.3 197 45.2
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.5e-32 141.4 117 60.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 7.5e-32 141.4 194 43.3
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.2e-31 139.8 329 33.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 4.9e-31 138.7 88 70.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.4e-30 137.1 197 41.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.6e-29 133.7 184 46.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 8.6e-28 127.9 203 40.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.1e-27 127.5 88 64.8
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.5e-27 126.3 199 39.2
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 7.3e-27 124.8 170 42.4
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.1e-26 123.2 168 44.6
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.8e-26 122.9 132 48.5
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.4e-25 120.6 88 60.2
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.8e-25 118.2 159 42.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 7.5e-24 114.8 127 49.6
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 2.2e-23 113.2 191 41.4
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 9.2e-22 107.8 122 55.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.6e-21 107.1 199 36.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.0e-21 106.7 153 45.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.6e-21 105.5 147 42.9
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-20 103.6 102 57.8
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.7e-20 103.6 102 57.8
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.6e-20 101.7 165 41.2
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.5e-19 99.8 102 56.9
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.5e-19 99.8 102 56.9
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 8.1e-18 94.7 160 42.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 3.1e-17 92.8 152 40.8
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.5e-16 90.5 151 40.4
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 7.5e-16 88.2 137 40.9
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 3.7e-15 85.9 81 60.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 3.0e-12 76.3 44 79.5
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.1e-12 75.5 73 54.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.6e-12 75.1 47 76.6
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.1e-11 74.3 98 42.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.3e-11 72.8 44 72.7
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.3e-11 72.8 44 72.7
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.6e-10 70.5 124 37.1
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 6.2e-10 68.6 47 61.7
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.1e-09 67.8 84 42.9
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-09 67.8 193 31.6


User provided reference genes

Program Settings