Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 2.5e-65 251.9 124 100.0
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 1.7e-45 186.0 122 79.5
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 7.2e-44 180.6 123 78.0
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 7.2e-44 180.6 123 78.0
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 9.4e-44 180.3 123 76.4
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 3.6e-43 178.3 122 77.0
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 4.6e-43 177.9 122 75.4
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 6.1e-43 177.6 123 76.4
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 7.9e-43 177.2 123 74.0
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 7.9e-43 177.2 123 74.0
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 1.0e-42 176.8 120 76.7
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 3.9e-42 174.9 123 73.2
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 5.1e-42 174.5 123 74.8
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 5.1e-42 174.5 123 74.8
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 5.1e-42 174.5 123 74.8
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 5.1e-42 174.5 123 74.8
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 5.1e-42 174.5 123 74.8
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 1.3e-40 169.9 124 72.6
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 1.3e-40 169.9 123 71.5
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 1.3e-40 169.9 123 71.5
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 1.7e-40 169.5 123 70.7
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 4.8e-40 167.9 114 77.2
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 2.6e-33 145.6 123 62.6
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 4.8e-24 114.8 125 54.4
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 4.1e-23 111.7 129 48.8
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 7.0e-23 110.9 126 48.4
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 7.0e-23 110.9 128 49.2
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 1.6e-22 109.8 130 49.2
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 2.7e-22 109.0 128 44.5
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 7.7e-22 107.5 124 46.8
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.0e-21 107.1 124 46.8
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.0e-21 107.1 124 46.8
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.7e-21 106.3 125 48.8
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 1.7e-21 106.3 128 48.4
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.2e-21 105.9 131 48.9
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 2.2e-21 105.9 131 48.1
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 2.9e-21 105.5 128 46.1
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 2.9e-21 105.5 130 47.7
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 3.8e-21 105.1 125 48.0
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 6.5e-21 104.4 130 47.7
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 8.5e-21 104.0 122 44.3
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 1.1e-20 103.6 132 46.2
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.1e-20 103.6 128 46.1
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.5e-20 103.2 133 47.4
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.5e-20 103.2 131 47.3
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.5e-20 103.2 124 46.0
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 1.9e-20 102.8 128 47.7
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 1.9e-20 102.8 134 44.0
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 1.9e-20 102.8 126 47.6
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.9e-20 102.8 135 46.7
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 1.9e-20 102.8 129 49.6
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 2.5e-20 102.4 139 44.6
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 2.5e-20 102.4 132 47.0
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 4.2e-20 101.7 131 45.0
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 4.2e-20 101.7 131 45.0
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.2e-20 101.7 125 47.2
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 4.2e-20 101.7 130 44.6
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 5.5e-20 101.3 134 45.5
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 5.5e-20 101.3 129 45.7
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 7.2e-20 100.9 119 48.7
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 7.2e-20 100.9 131 45.8
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 7.2e-20 100.9 132 47.0
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 9.4e-20 100.5 135 45.9
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 9.4e-20 100.5 133 45.9
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 9.4e-20 100.5 133 45.9
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 9.4e-20 100.5 129 45.7
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.2e-19 100.1 125 46.4
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.6e-19 99.8 133 45.9
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.6e-19 99.8 135 42.2
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.1e-19 99.4 125 46.4
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.1e-19 99.4 129 45.7
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 2.7e-19 99.0 123 49.6
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 2.7e-19 99.0 133 45.1
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 2.7e-19 99.0 127 42.5
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 3.6e-19 98.6 140 43.6
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 3.6e-19 98.6 130 46.2
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 6.1e-19 97.8 114 50.0
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 2.3e-18 95.9 126 43.7
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 2.3e-18 95.9 131 43.5
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 3.0e-18 95.5 139 41.0
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 4.0e-18 95.1 137 44.5
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 4.0e-18 95.1 106 50.0
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 4.0e-18 95.1 129 44.2
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 5.2e-18 94.7 133 42.9
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 6.8e-18 94.4 136 40.4
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 8.8e-18 94.0 132 43.9
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 8.8e-18 94.0 131 38.9
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 8.8e-18 94.0 133 45.9
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.5e-17 93.2 137 44.5
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 2.0e-17 92.8 136 41.9
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 2.6e-17 92.4 128 40.6
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 4.4e-17 91.7 137 41.6
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 4.4e-17 91.7 133 40.6
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 5.7e-17 91.3 94 51.1
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 5.7e-17 91.3 122 43.4
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 7.5e-17 90.9 117 44.4
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 1.3e-16 90.1 129 40.3
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 1.3e-16 90.1 130 43.1
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.3e-16 90.1 129 38.8
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 2.8e-16 89.0 130 42.3
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 3.7e-16 88.6 122 41.8
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 8.3e-16 87.4 103 41.7
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.4e-15 86.7 109 44.0
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.8e-15 86.3 127 42.5
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 2.4e-15 85.9 126 42.9
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 3.1e-15 85.5 94 46.8
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.7e-13 79.7 135 36.3
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.9e-13 79.0 130 38.5
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 1.9e-12 76.3 146 36.3
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 5.5e-12 74.7 107 40.2
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 6.8e-10 67.8 113 38.9
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.2e-09 67.0 103 41.7
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 4.4e-09 65.1 114 36.8
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 9.8e-09 63.9 113 36.3
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 1.3e-08 63.5 79 46.8
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.8e-07 59.7 100 38.0
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.4e-07 59.3 72 44.4
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 3.5e-06 55.5 125 36.0


User provided reference genes

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